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Probing condensate microenvironments with a micropeptide killswitch.

Yaotian Zhang1,2, Ida Stöppelkamp1,2, Pablo Fernandez-Pernas3

  • 1Max Planck Institute for Molecular Genetics, Berlin, Germany.

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|June 4, 2025
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Summary
This summary is machine-generated.

Scientists developed a novel "killswitch" micropeptide to probe cellular condensates. This tool immobilizes proteins within condensates, revealing their crucial role in cell function and disease processes.

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Area of Science:

  • Cell Biology
  • Biochemistry
  • Molecular Biology

Background:

  • Biomolecular condensates form distinct subcellular microenvironments.
  • Probing condensate microenvironments and their functions is challenging due to limited tools for selective manipulation in living cells.

Purpose of the Study:

  • To develop a universal system to probe endogenous biomolecular condensates.
  • To demonstrate direct links between condensate microenvironments and biological functions.

Main Methods:

  • Development of a non-natural micropeptide (killswitch) and a nanobody-based recruitment system.
  • Recruitment of the killswitch to endogenous condensates in human cells, including nucleolar, cancer-related, and viral condensates.
  • Assessment of the effects of killswitch-induced protein immobilization on condensate composition, protein mobility, and cellular processes.

Main Results:

  • The killswitch successfully immobilized condensate-forming proteins, altering condensate composition and function.
  • Targeting the killswitch to nucleoli affected nucleolar composition and ribosomal protein mobility.
  • Killswitch recruitment to cancer-specific condensates inhibited leukemia cell proliferation.
  • Inhibition of adenoviral particle assembly was observed upon killswitch targeting to viral condensates.

Conclusions:

  • The microenvironment within cellular condensates is essential for protein enrichment and mobility.
  • The killswitch is a versatile tool for altering condensate material properties and investigating their roles in diverse physiological and pathological processes.