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Updated: Sep 18, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
A Dataset of Medical Questions Paired with Automatically Generated Answers and Evidence-supported References.
Deepak Gupta1, Davis Bartels2, Dina Demner-Fushman2
1National Library of Medicine, National Institutes of Health, HHS, Bethesda, MD, USA. deepak.gupta@nih.gov.
New datasets are needed to ensure medical AI answers are factual. The MedAESQA dataset helps train and evaluate AI to link answers to supporting scientific evidence, improving medical question answering systems.
Area of Science:
- Artificial Intelligence
- Medical Informatics
- Natural Language Processing
Background:
- Large Language Models (LLMs) demonstrate advanced capabilities in medical question answering, improving answer quality.
- However, LLM-generated answers may lack factual accuracy, posing risks of misinformation.
- There is a critical need for datasets to assess and enhance the truthfulness of AI-generated medical information.
Purpose of the Study:
- Introduce the MedAESQA dataset for evaluating evidence-based medical question answering.
- Facilitate the development and fine-tuning of language models for factual attribution.
- Enable reliable detection of AI-generated answers not supported by scientific evidence.
Main Methods:
- Developed MedAESQA, a dataset with 40 aggregated, deidentified medical questions.
- Included 30 human and LLM-generated answers per question, with each statement linked to supporting scientific abstracts.
- Incorporated manual judgments on statement accuracy and scientific paper relevance.
Main Results:
- The MedAESQA dataset provides a benchmark for assessing factual accuracy in medical AI.
- It enables the evaluation of AI's ability to cite and link statements to reliable sources.
- Facilitates research into robust methods for detecting unsupported claims in medical AI.
Conclusions:
- MedAESQA is crucial for advancing trustworthy medical question answering systems.
- The dataset supports the creation of AI that generates factually attributable and evidence-based responses.
- Enhances the reliability and safety of LLM applications in healthcare.
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