Deep Learning-Based Segmentation of Gravity-Loaded Human Spine

Accurate analysis of spinal alignment under gravity-loaded conditions is essential for diagnosing and managing musculoskeletal disorders such as scoliosis and degenerative disc disease. Traditional imaging techniques, such as 2D radiographs and supine CT or MRI, do not capture the full 3D geometry of the spine in a load-bearing state. Weight-bearing cone-beam computed tomography (CBCT) provides high-resolution, 3D images in a standing position, allowing for a more accurate evaluation of spinal alignment. This study presents a deep learning-based protocol for segmenting these images using a U-Net convolutional neural network (CNN) with 3D convolutional layers and residual connections to segment the vertebral bodies, pelvis, and femoral head. The protocol includes image acquisition, manual annotation, preprocessing, and model training. Successful segmentation of the anatomical structures enables accurate measurement of clinically relevant spinal parameters such as Cobb angle and vertebral rotation. Additionally, the segmented 3D models can be exported in STL format for 3D printing, facilitating surgical planning and patient education. Furthermore, the protocol can be adapted to train segmentation models for other anatomical structures requiring assessment under gravity-loaded conditions, such as the lower limb. This method provides a reliable and adaptable tool for accurately segmenting spinal and other anatomical structures in gravity-loaded conditions, with practical applications in both clinical diagnostics and research studies.