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Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
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Effective and lightweight representation learning for signed bipartite graphs.

Gyeongmin Gu1, Minseo Jeon2, Hyun-Je Song1

  • 1School of Electronics and Information Engineering (Computer Science), Jeonbuk National University, Jeonju, 54896, Republic of Korea.

Neural Networks : the Official Journal of the International Neural Network Society
|July 18, 2025
PubMed
Summary
This summary is machine-generated.

This study introduces ELISE, a new method for learning node representations in signed bipartite graphs. ELISE improves accuracy and efficiency by extending personalized propagation and using low-rank graph approximations.

Keywords:
Node representation learningSigned bipartite graphsSigned graph neural networks

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Area of Science:

  • Graph Neural Networks
  • Machine Learning
  • Network Science

Background:

  • Signed bipartite graphs model complex relationships in e-commerce and peer review.
  • Existing Graph Neural Network (GNN) methods struggle with over-smoothing and inefficiency.
  • Current approaches often add edges, increasing complexity and vulnerability to noise.

Purpose of the Study:

  • To propose ELISE, a lightweight GNN-based method for effective node representation learning in signed bipartite graphs.
  • To address limitations of existing methods, including over-smoothing, noise sensitivity, and inefficiency.
  • To enhance the accuracy and efficiency of learning node embeddings in signed bipartite networks.

Main Methods:

  • Extended personalized propagation to signed bipartite graphs, integrating edge signs without adding new edges.
  • Employed joint learning of node embeddings on a low-rank graph approximation.
  • Developed a lightweight GNN architecture named ELISE.

Main Results:

  • ELISE effectively mitigates over-smoothing by incorporating signed edges directly.
  • Low-rank approximation reduces noise and enhances expressiveness without compromising efficiency.
  • ELISE demonstrated superior performance in link sign prediction on real-world datasets compared to existing methods.

Conclusions:

  • ELISE offers an efficient and effective solution for node representation learning in signed bipartite graphs.
  • The method achieves faster training and inference speeds.
  • ELISE provides a robust alternative to existing GNNs for signed bipartite network analysis.