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Identifying the Genetic Ancestry of the Pediatric Obesity-Related Asthma Variant (rs6494395) at Rps27l
David Yang1, Anthony Griffen1, Mariko Isshiki1
1Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA.
Insights
The genetic variant rs6494395, linked to obesity-related asthma in children, originates from African ancestry. This finding is crucial for understanding health disparities in asthma.
Area of Science:
- Genetics
- Immunology
- Pediatrics
Background:
- Obesity-related asthma (OA) disproportionately affects minority children.
- A specific genetic variant, rs6494395, was previously linked to OA and showed higher frequency in Hispanic/Latino and African American children.
- This variant was associated with reduced RPS27L expression in CD4+ T-cells.
Purpose of the Study:
- To investigate the ancestry-specific origins of the rs6494395 genetic variant.
- To determine if the variant's prevalence in certain ethnic groups is due to its ancestral origin.
Main Methods:
- Global genomic ancestry analysis using ADMIXTURE.
- Local genomic ancestry analysis using RFMix on the rs6494395 region.
- Study conducted in a multi-ethnic pediatric cohort with OA.
Main Results:
- The genetic variant rs6494395 was determined to have African genetic ancestral origin.
- This finding supports the higher allele frequency observed in African and Hispanic/Latino populations.
Conclusions:
- Identifying the ancestral origin of genetic variants like rs6494395 is key to understanding OA in diverse populations.
- This knowledge can inform precision medicine strategies and help reduce asthma health disparities.
Background:
Obesity-related asthma (OA) is a severe asthma endotype that disproportionately affects children from minority ethnic groups. We previously identified downregulation of RPS27L (40S ribosomal protein S27-like) in CD4+ (T-helper) cells from children with OA compared to cells from healthy-weight asthma that was associated with the C allele at the rs6494395 locus. Consistent with elevated allele frequencies in populations with Latino and African ancestries, we found a higher allele frequency of rs6494395 in Hispanic/Latino and African American children with OA.
Aims:
We tested the hypothesis that rs6494395 alleles have ancestry-specific origins.
Materials And Methods:
We performed global genomic ancestry analysis using the program ADMIXTURE to characterize the proportions of continental genetic ancestry in each individual. Subsequently, we performed local genomic ancestry analysis using the program RFMix, to identify the ancestry of the genomic region containing the variant rs6494395 in the same multi-ethnic pediatric cohort where the effect of the variant on obese-related asthma was discovered.
Results:
Our results indicate that rs6494395 has an African genetic ancestral origin.
Conclusions:
Understanding the genetic underpinnings of pediatric OA in diverse populations can improve precision medicine approaches and address health disparities in asthma outcomes.
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