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Updated: Sep 13, 2025

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
Lung Adenocarcinoma Expressing an EML4-ALK Fusion Transcript With Premature Stop Codons and Response to Alectinib: A
Mami Ozaki1, Hiroaki Ikushima1, Masaki Suzuki2
1Department of Respiratory Medicine, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
This study details a rare case of lung adenocarcinoma with an Anaplastic Lymphoma Kinase (ALK) fusion detected via advanced sequencing. Despite initial negative results, the patient responded well to targeted therapy, highlighting the need for comprehensive diagnostic approaches.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Anaplastic Lymphoma Kinase (ALK) fusions are key drivers in lung adenocarcinoma.
- Conventional PCR assays may miss certain ALK rearrangements.
- Alternative mechanisms of ALK activation exist beyond standard fusion events.
Observation:
- An 80-year-old male patient with metastatic lung adenocarcinoma initially tested negative for ALK rearrangement by PCR.
- RNA-based hybrid capture sequencing identified an EML4-ALK fusion transcript.
- The identified fusion contained a premature stop codon, seemingly preventing protein expression.
Findings:
- Immunohistochemistry revealed significant ALK protein overexpression.
- This suggests alternative translation initiation sites were utilized.
- The patient demonstrated a substantial clinical response to alectinib treatment.
Implications:
- This case emphasizes the critical need for utilizing multiple molecular diagnostic techniques to identify actionable gene fusions.
- Comprehensive testing ensures accurate patient stratification for targeted therapies.
- Understanding alternative ALK activation mechanisms can improve treatment strategies in lung cancer.
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