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ToxiTaRGET: a multi-omics resource for toxicant-responsive molecular targets.
Ravindra Kumar1,2, Tianyi Fu1,2, Prashant Kumar Kuntala3
1Department of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63108, USA.
Early-life exposure to environmental toxicants like arsenic and lead can cause lasting molecular changes in mice. The ToxiTaRGET II Consortium created a resource to study these toxicant-induced genomic and epigenomic alterations.
Area of Science:
- Environmental health
- Toxicogenomics
- Genomics and epigenomics
Background:
- Environmental toxicants induce molecular alterations, increasing disease risk.
- Understanding long-term impacts of early-life exposures is crucial.
Purpose of the Study:
- To evaluate long-term transcriptome and epigenome impacts of early-life toxicant exposures in mice.
- To create a comprehensive resource for studying these effects.
Main Methods:
- The Toxicant Exposures and Responses by Genomic and Epigenomic Regulators of Transcription II (TaRGET II) Consortium conducted longitudinal studies.
- Generated 3,607 multi-omics datasets from mice exposed to various toxicants.
- Systematically identified and visualized molecular changes using the ToxiTaRGET platform.
Main Results:
- Identified molecular signatures (gene expression, chromatin accessibility, DNA methylation) in response to toxicants.
- Data spans multiple tissues, sexes, and life stages in mice.
- The ToxiTaRGET platform provides an integrated view of these molecular changes.
Conclusions:
- Early-life toxicant exposures cause significant and lasting molecular changes.
- The ToxiTaRGET resource facilitates research in environmental health and toxicogenomics.
- Provides a foundation for understanding disease links to environmental exposures.
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