Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Molecular Models02:00

Molecular Models

40.4K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
40.4K
Newman Projections02:06

Newman Projections

17.6K
Different notations are used to represent the three-dimensional structure of molecules on two-dimensional surfaces. One of the most commonly used representations is the dash-wedge formula. The dashed wedges, solid wedges, and the plane lines indicate the groups situated behind the plane, coming out of the plane, and in the plane, respectively.
The organic molecules rotate across the single bonds leading to numerous temporary three-dimensional structures of varying energy known as...
17.6K
Organic Compounds03:02

Organic Compounds

53.2K
All living things are formed mostly of carbon compounds called organic compounds. The category of organic compounds includes both natural and synthetic compounds that contain carbon. Although a single, precise definition has yet to be identified by the chemistry community, most agree that a defining trait of organic molecules is the presence of carbon as the principal element, bonded to hydrogen and other carbon atoms. However, some carbon-containing compounds such as carbonates, cyanides, and...
53.2K
Predicting Molecular Geometry02:27

Predicting Molecular Geometry

35.9K
VSEPR Theory for Determination of Electron Pair Geometries
35.9K
Noncovalent Attractions in Biomolecules02:35

Noncovalent Attractions in Biomolecules

54.6K
Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
54.6K
Structure of Benzene: Molecular Orbital Model01:18

Structure of Benzene: Molecular Orbital Model

9.9K
According to the molecular orbital (MO) model, benzene has a planar structure with a regular hexagon of six sp2 hybridized carbons. As shown in Figure 1, each carbon is bonded to three other atoms with C–C–C and H–C–C bond angles of 120°. The C–H bond length is 109 pm, and the C–C bond length is 139 pm which is midway between the single bond length of sp3 hybridized carbons (154 pm) and sp2 hybridized carbons (133 pm).
9.9K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Wafer-scale uniform non-ferroelectric κ-phase In<sub>2</sub>Se<sub>3</sub> transistors.

Nature communications·2026
Same author

An Unorthodox Enolate-Triggered Radical Relay Directs the Chemo Upgrading of Levulinic Acid Into Citramalic Acid.

ChemSusChem·2026
Same author

Accelerating Materials Discovery Through Sparse Gaussian Process Machine Learning Potentials.

Accounts of chemical research·2025
Same author

Data-Driven Search Algorithm for Discovery of Synthesizable Zeolitic Imidazolate Frameworks.

JACS Au·2025
Same author

Machine Learning Nonadiabatic Dynamics: Eliminating Phase Freedom of Nonadiabatic Couplings with the State-Interaction State-Averaged Spin-Restricted Ensemble-Referenced Kohn-Sham Approach.

Journal of chemical theory and computation·2025
Same author

Back-End-of-Line-Compatible Passivation of Sulfur Vacancies in MoS<sub>2</sub> Transistors Using Electron-Withdrawing Benzenethiol.

ACS nano·2025
Same journal

Modeling the Clustering of Fumaric/Maleic Acid with Water and Na<sup>+</sup>, Cl<sup>-</sup> Ions.

The journal of physical chemistry. A·2026
Same journal

Determining Binding Energies of Key Fluorinated Refrigerants 1,1,1,2-Tetrafluoroethane, 2,3,3,3-Tetrafluoropropene, and 3,3,3-Trifluoropropene.

The journal of physical chemistry. A·2026
Same journal

Kinetic and Mechanistic Insights into H-Abstraction and Subsequent Isomerization and Decomposition of Monoglyme and Key Combustion Intermediates.

The journal of physical chemistry. A·2026
Same journal

First-Principles Analysis of Protonation-Induced Electronic Effects in Tetrakis(<i>p</i>-aminophenyl)porphyrin (TAPP).

The journal of physical chemistry. A·2026
Same journal

Exploring the Reactivity of the CH Radical toward Nitrous Oxide in the Context of the Interstellar Medium.

The journal of physical chemistry. A·2026
Same journal

Infrared Photodissociation Spectroscopy of Benzene-V<sup>+</sup>(CO)<sub>n</sub> "Piano Stool" Cations.

The journal of physical chemistry. A·2026
See all related articles

Related Experiment Video

Updated: Sep 10, 2025

Interactive Molecular Model Assembly with 3D Printing
06:15

Interactive Molecular Model Assembly with 3D Printing

Published on: August 13, 2020

10.2K

A Bayesian Committee Machine-Based Force Field for Organic Nitrogen Compounds.

Hyun Gyu Park1, Gi Beom Sim1, Jung Woon Yang1,2

  • 1Department of Energy Science, Sungkyunkwan University, Seobu-ro 2066, Suwon 16419, Republic of Korea.

The Journal of Physical Chemistry. A
|August 23, 2025
PubMed
Summary
This summary is machine-generated.

Machine learning force fields (MLFFs) offer efficient, accurate simulations for carbon-nitrogen-hydrogen (C-N-H) compounds. A Robust Bayesian Committee Machine (RBCM) model accurately predicts potential energy surfaces for organic molecules.

More Related Videos

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

483
Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches
07:31

Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches

Published on: September 1, 2023

2.5K

Related Experiment Videos

Last Updated: Sep 10, 2025

Interactive Molecular Model Assembly with 3D Printing
06:15

Interactive Molecular Model Assembly with 3D Printing

Published on: August 13, 2020

10.2K
Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

483
Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches
07:31

Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches

Published on: September 1, 2023

2.5K

Area of Science:

  • Computational Chemistry
  • Materials Science
  • Chemical Physics

Background:

  • Large-scale atomic simulations are crucial but computationally expensive.
  • Machine learning force fields (MLFFs) offer a cost-effective, accurate alternative to traditional methods like density functional theory (DFT).
  • Kernel-based MLFFs face challenges in generalizing across diverse atomic environments and compounds.

Purpose of the Study:

  • To develop a robust machine learning force field (MLFF) applicable to various carbon-nitrogen-hydrogen (C-N-H) compounds.
  • To overcome the limitations of existing kernel-based models in predicting potential energies across different molecular structures.
  • To enable efficient and accurate simulations of C-N-H systems.

Main Methods:

  • Developed a novel MLFF utilizing the Robust Bayesian Committee Machine (RBCM) framework.
  • Trained the RBCM-based MLFF using first-principles calculations and molecular dynamics simulations.
  • Employed diverse C-N-H molecules for comprehensive training data generation.

Main Results:

  • The RBCM-based MLFF demonstrated excellent agreement with DFT results for longer amine structures.
  • Accurate predictions were achieved for two Diels-Alder reactions, validating the model's performance.
  • The developed MLFF effectively captures the potential energy surfaces of organic molecules.

Conclusions:

  • Machine learning models, specifically the RBCM-based MLFF, can accurately predict potential energy surfaces for C-N-H organic molecules.
  • This approach significantly enhances simulation efficiency compared to traditional methods.
  • The developed MLFF provides a powerful tool for studying a wide array of C-N-H compounds.