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Evaluation of Chunking and Embedding Strategies for Local Document Retrieval Using an Open-Source LLM in a Hospital.
Jan Bossenz1, Carlo Günzl1, Fabian Berns2
1Junior Research Group (Bio-) Medical Data Science, Faculty of Medicine, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany.
Optimizing chunking and embedding is key for domain-specific Retrieval-Augmented Generation (RAG) systems. Aari1995 and Jinaai-v3 models show different strengths in accuracy and efficiency for hospital administrative document retrieval.
Area of Science:
- Natural Language Processing
- Information Retrieval
- Artificial Intelligence
Background:
- Retrieval-Augmented Generation (RAG) enhances context-aware and traceable information access.
- Domain-specific RAG systems require tailored strategies for optimal performance.
- This study focuses on RAG for administrative documents at University Hospital Halle.
Purpose of the Study:
- To explore chunking and embedding strategies for a RAG-based question-answering system.
- To evaluate model selection, parameter tuning, and retrieval performance.
- To lay the groundwork for a RAG chatbot to aid hospital staff in accessing documents.
Main Methods:
- Preprocessed and chunked a corpus of 1,219 administrative documents.
- Evaluated eight embedding models using Similarity Score and Maximum Marginal Relevance (MMR) retrievers.
- Analyzed top models (Jinaai-v3, Aari1995) with varied parameters and ensemble retrievers.
Main Results:
- Aari1995 achieved a 92.3% Top10 score, showing stable performance.
- Jinaai-v3 excelled in Top5 (84.6%) and Top3 (76.9%) scores but was less stable.
- Ensemble retrievers improved quality; Jinaai-v3 offered faster vector store generation; Similarity Score outperformed MMR.
Conclusions:
- Chunking and embedding significantly impact RAG retrieval effectiveness.
- Jinaai-v3 and Aari1995 offer distinct trade-offs in stability, accuracy, and efficiency.
- Findings support a locally executable RAG system, guiding future parameter optimization.
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