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Mechanisms of Membrane-bending01:15

Mechanisms of Membrane-bending

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The living membranes are flexible due to their fluid mosaic nature; however, their bending into different shapes is an active process regulated by specific lipids and proteins. The membrane bending can be transient as seen in vesicles or stable for a long time as in microvilli. Cells regulate the size, location, and duration of the membrane curvature.
Membrane bending can happen due to intrinsic changes in lipid composition or extrinsic association with different proteins. The proteins involved...
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Related Experiment Video

Updated: Jan 18, 2026

Measuring Properties of the Membrane Periodic Skeleton of the Axon Initial Segment using 3D-Structured Illumination Microscopy 3D-SIM
07:40

Measuring Properties of the Membrane Periodic Skeleton of the Axon Initial Segment using 3D-Structured Illumination Microscopy 3D-SIM

Published on: February 11, 2022

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A correlation-based tool for quantifying membrane periodic skeleton associated periodicity.

Sam K Vanspauwen1, Virginia Luque-Fernández1, Hanne B Rasmussen1

  • 1Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

Frontiers in Neuroinformatics
|September 8, 2025
PubMed
Summary
This summary is machine-generated.

We developed Napari-WaveBreaker, an open-source tool to quantify the periodic localization of proteins within the membrane-associated periodic skeleton (MPS). This method accurately analyzes MPS periodicity and co-distribution, aiding in understanding neuronal structure.

Keywords:
autocorrelationaxon initial segmentcross-correlationmembrane-associated periodic skeletonnaparisoftwaresuper-resolution microscopy

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Area of Science:

  • Neuroscience
  • Cell Biology
  • Biophysics

Background:

  • Super-resolution microscopy revealed the membrane-associated periodic skeleton (MPS), a neuronal cytoskeletal structure with actin rings spaced 190 nm apart.
  • Numerous proteins associate with the MPS, but tools for quantifying their periodic localization are limited.

Purpose of the Study:

  • To develop an open-source tool for accurate and unbiased quantification of MPS periodicity and protein co-distribution.
  • To provide a framework for analyzing molecular organization within the MPS.

Main Methods:

  • Development of Napari-WaveBreaker, an open-source plugin for the Napari image viewer.
  • Utilized autocorrelation to quantify MPS periodicity and cross-correlation for assessing co-distribution of targets.
  • Evaluated performance using simulated datasets and STED microscopy images.

Main Results:

  • Napari-WaveBreaker accurately quantified MPS periodicity and detected spatial shifts between periodic targets.
  • The tool demonstrated robustness across varying image qualities.
  • Successfully distinguished between periodic and non-periodic protein distributions.

Conclusions:

  • Napari-WaveBreaker offers an unbiased, quantitative framework for analyzing MPS periodicity and co-distribution.
  • Enables new insights into the molecular organization and modulation of the MPS.