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Cross-Modality Comparison of Fetal Brain Phenotypes: Insights From Short-Interval Second-Trimester MRI and Ultrasound
Madeleine K Wyburd1, Nicola K Dinsdale1, Vanessa Kyriakopoulou2,3
1Oxford Machine Learning in NeuroImaging Lab, Department of Computer Science, University of Oxford, Oxford, UK.
Human Brain Mapping
|October 1, 2025
Summary
Three-dimensional ultrasound (3D US) and magnetic resonance imaging (MRI) show good agreement for fetal brain structure volumes, but require adjustments for accurate interpretation. Differences in image-derived phenotypes highlight the need for modality-specific analysis in fetal neuroimaging.
Area of Science:
- Neuroimaging
- Medical Imaging
- Fetal Development
Background:
- Three-dimensional ultrasound (3D US) and magnetic resonance imaging (MRI) are advanced techniques for studying fetal brain development.
- These modalities capture different physical signals, potentially causing discrepancies in image-derived phenotypes (IDPs).
Purpose of the Study:
- To evaluate the agreement of IDPs between 3D US and MRI for fetal brain structures.
- To compare volumes of eight brain structures derived from US and MRI using deep learning algorithms.
Main Methods:
- Comparison of brain structure volumes from 90 subjects using 3D US and MRI data.
- Deep learning algorithms were employed for IDP extraction.
- Intraclass correlation coefficient (ICC) and Bland-Altman analysis were used to assess agreement and bias.
Main Results:
- Excellent agreement (ICC > 0.75) was found for cerebellum, cavum septum pellucidum, thalamus, white matter, and deep grey matter volumes.
- Significant correlations (p < 0.001) were observed for most structures, excluding the ventricular system.
- Systematic biases were noted: intracranial and cortical plate volumes were larger on US than MRI.
Conclusions:
- Modality-specific adjustments are necessary when interpreting fetal brain IDPs across US and MRI.
- US and MRI play complementary roles in advancing fetal neuroimaging research.
- The brainstem and ventricular system labels were not comparable between the two modalities.

