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Updated: Jan 16, 2026

Analysis of Human T Cell Activity in an Allogeneic Co-Culture Setting of Pre-Treated Tumor Cells
Published on: March 7, 2025
Distinct T cell functions enable efficient immunoediting and prevent tumor emergence of developing sarcomas
Julie F Cheung1, Brian G Hunt1, Shudipto Wahed1
1Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Abstract:
T cells edit tumors by eliminating neoantigen-expressing tumor cells. Yet, how and when this is achieved remains uncertain. Using a murine sarcoma model with fluorescent neoantigens, we found that tumors developed later and in fewer T cell-sufficient mice (∼53% penetrance) than T cell-deficient mice (∼100%). With T cells, all emergent tumor cells had silenced neoantigens, but neoantigen-negative tumor cells were also present in every T cell-deficient mouse. This suggested silencing was necessary but not sufficient for outgrowth. Genetic removal of neoantigens restored tumor penetrance if implemented on day 5 post-tumor initiation, but not day 10, because CD8+ and CD4+ T cells infiltrated the tissue and eliminated most neoantigen-positive and -negative tumor cells within 8 days. Single-cell analyses on day-7 tumors showed oncogenic changes including increased proliferation and T cell-dependent upregulation of the IFNγ-response gene Cd274 (PD-L1). T cell-depletion rescued both neoantigen-positive and -negative cells, while IFNγ blockade rescued only negative cells. This shows that T cells efficiently edit sarcomas of neoantigens and prevent early tumors via IFNγ-independent and IFNγ-dependent (bystander) mechanisms.
Insights
T cells eliminate tumors by silencing neoantigens, but tumor cells can still grow. Immune responses prevent early tumor development through both direct and bystander mechanisms.
Area of Science:
- Immunology
- Cancer Biology
- Tumor Microenvironment
Background:
- T cells are crucial for eliminating tumor cells expressing neoantigens.
- The precise mechanisms and timing of T cell-mediated tumor editing remain unclear.
Purpose of the Study:
- To investigate how T cells edit sarcomas by eliminating neoantigen-expressing cells.
- To determine the timing and mechanisms of T cell-mediated tumor suppression.
Main Methods:
- Utilized a murine sarcoma model with fluorescent neoantigens.
- Employed single-cell analyses to examine tumor cell populations and T cell infiltration.
- Investigated the roles of IFNγ and PD-L1 in T cell-mediated tumor editing.
Main Results:
- Tumor development was significantly reduced in T cell-sufficient mice compared to T cell-deficient mice.
- Emergent tumor cells in T cell-sufficient mice had silenced neoantigens, but neoantigen-negative cells were also present.
- T cell infiltration and elimination of tumor cells occurred within 8 days, particularly when neoantigen loss was manipulated early.
- T cell-dependent upregulation of PD-L1 and IFNγ-response genes was observed.
- T cell depletion rescued both neoantigen-positive and -negative cells, while IFNγ blockade only rescued negative cells.
Conclusions:
- T cells effectively edit sarcomas by eliminating neoantigen-expressing cells.
- T cells prevent early tumor formation through both IFNγ-independent and IFNγ-dependent (bystander) mechanisms.
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