Related Experiment Video
Updated: Jan 14, 2026

08:50
Methylated RNA Immunoprecipitation Assay to Study m5C Modification in Arabidopsis
Published on: May 14, 2020
7.2K
Expanding Epitranscriptomics to Non-Enzymatic RNA Modifications
Kaila Nishikawa1,2, Yael David1,2,3,4, Anna Knörlein1
1Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Summary
Non-enzymatic covalent modifications (NECMs) on RNA, distinct from enzymatic ones, are increasingly recognized. This review explores their impact on RNA function and potential disease links, highlighting an underexplored area of cellular regulation.
Area of Science:
- Biochemistry
- Molecular Biology
- Epigenetics
Background:
- Cells utilize reversible modifications on proteins, DNA, and RNA for regulation and fate control, primarily via enzymes.
- Non-enzymatic covalent modifications (NECMs) also occur spontaneously on biomolecules through reactions with small molecules.
- While studied in proteins and DNA, the biological role of RNA NECMs remains largely unexplored.
Purpose of the Study:
- To survey identified and predicted non-enzymatic covalent modifications on RNA.
- To explore the impact of RNA NECMs on RNA structure, stability, and function.
- To examine the potential link between RNA NECMs and human diseases.
Main Methods:
- Literature review of identified and predicted RNA NECMs.
- Analysis of existing data on the impact of NECMs on RNA.
- Exploration of potential disease associations and regulatory mechanisms.
Main Results:
- Identified and predicted RNA NECMs represent a significant, understudied modification class.
- These modifications can alter RNA structure, stability, and biological function.
- Emerging evidence suggests a potential link between RNA NECMs and various diseases.
Conclusions:
- Non-enzymatic covalent modifications on RNA are a critical area for future research.
- Understanding RNA NECMs can provide new insights into cellular dynamics and disease pathogenesis.
- Further investigation into regulatory mechanisms and functional consequences of RNA NECMs is warranted.
More Related Videos
Related Concept Videos
Ribosome Profiling
4.1K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.1K
RNA Editing
9.8K
RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
9.8K
Pre-mRNA Processing: Modification of pre-mRNA Ends
13.7K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
13.7K
RNA Stability
35.6K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.6K
pre-mRNA Processing
57.1K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl...
57.1K
Leaky Scanning
5.6K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.6K

