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Holographic 3D Spatial Localization for Bioassay Based on Depth-Label Encoding and End-to-End Attention Network
Minjie Han1,2, Junpeng Zhao2, Weiqi Zhao2
1State Key Laboratory of Marine Food Processing and Safety Control, Dalian Polytechnic University, Dalian, Liaoning 116034, China.
Analytical Chemistry
|November 17, 2025
Summary
This study introduces a novel holographic bioassay platform for enhanced 3D detection. The 3D_EEA biosensor improves sensitivity and accuracy for trace-level antibiotic detection in food safety and environmental monitoring.
Area of Science:
- Optics and Photonics
- Biomedical Engineering
- Machine Learning
Background:
- Lens-free holographic imaging struggles with limited depth of field and volumetric detection.
- Current methods for 3D localization are often slow and costly.
Purpose of the Study:
- To develop a holographic bioassay platform with enhanced depth of field and volumetric detection capacity.
- To enable accurate, real-time 3D localization for improved biosensing.
Main Methods:
- Integration of depth-label encoding with an attention-based neural network for 3D spatial localization.
- Development of a dual-task framework combining bounding box detection and depth classification.
- Application of the platform for chloramphenicol detection.
Main Results:
- Achieved extended depth of field and increased microsphere density for volumetric detection.
- Enabled chloramphenicol detection over a wide dynamic range (5 pg/mL to 100 ng/mL).
- Demonstrated a 10-fold sensitivity enhancement compared to 2D hologram-based assays.
Conclusions:
- The 3D_EEA biosensor offers a scalable solution for trace-level antibiotic detection.
- The platform shows excellent performance and practical potential for food safety and environmental monitoring.
- Overcomes limitations of traditional holographic reconstruction, enabling real-time 3D localization.

