Related Experiment Video
Updated: Jan 10, 2026

09:46
Direct Comparison of Hyperspectral Stimulated Raman Scattering and Coherent Anti-Stokes Raman Scattering Microscopy for Chemical Imaging
Published on: April 28, 2022
4.7K
Effects of biological fixation methods on stimulated Raman scattering microscopy signal
Chiara Ceconello1,2, Wuji Han3, Bryce Manifold1
1Department of Bioengineering, University of California, Berkeley.
Biorxiv : the Preprint Server for Biology
|November 26, 2025
Summary
Chemical fixation impacts Stimulated Raman Scattering (SRS) microscopy. Paraformaldehyde (PFA) and Glutaraldehyde (GA) minimally alter cellular and molecular states, ensuring accurate SRS imaging of cells and tissues.
Area of Science:
- Cellular and Molecular Imaging
- Biophysical Techniques
- Microscopy and Spectroscopic Methods
Background:
- Stimulated Raman Scattering (SRS) microscopy offers label-free, chemically specific imaging of biological samples.
- Chemical fixation is often advantageous for sample preparation but can perturb native cellular states and affect SRS signals.
- Understanding fixative-induced changes is crucial for accurate interpretation of SRS microscopy data.
Purpose of the Study:
- To systematically evaluate the impact of common chemical fixatives on cellular integrity and molecular composition using SRS microscopy.
- To assess how different fixatives influence lipid and protein content and cell morphology in a Hela cell model.
- To provide guidance on optimal sample preparation for reliable quantitative SRS microscopy.
Main Methods:
- Hela cells were treated with various fixatives: Paraformaldehyde (PFA), Formalin, Glutaraldehyde (GA), Methanol, and Ethanol.
- Cellular integrity, molecular composition (lipids, proteins), and morphology were analyzed using SRS microscopy.
- Quantitative analysis of fixative-induced alterations in SRS signals was performed.
Main Results:
- Different fixatives exhibited varying degrees of disruption to cellular integrity and molecular composition.
- Paraformaldehyde (PFA) demonstrated minimal perturbation of cellular and molecular states compared to other fixatives.
- Glutaraldehyde (GA) was identified as a suitable alternative fixative for SRS imaging, preserving molecular information effectively.
- Fixatives significantly influenced lipid and protein content, impacting quantitative SRS measurements.
Conclusions:
- The choice of fixative critically affects the accuracy of quantitative SRS microscopy.
- Paraformaldehyde (PFA) is recommended for its minimal impact on native cellular and molecular states.
- Glutaraldehyde (GA) presents a viable alternative for SRS imaging when fixation is necessary.
- This study aids in selecting optimal sample preparation methods for reliable SRS-based investigations of cellular processes and diseases.
Related Concept Videos
Raman Spectroscopy: Overview
1.3K
The underlying principle of Raman spectroscopy is based on the interaction between light and matter, specifically molecules' inelastic scattering of photons. When a monochromatic beam of light, typically from a laser source, interacts with a sample, most scattered light has the same frequency as the incident light. This is known as Rayleigh scattering.
However, a small fraction of the scattered light exhibits a frequency shift due to the exchange of energy between the incident photons and...
However, a small fraction of the scattered light exhibits a frequency shift due to the exchange of energy between the incident photons and...
1.3K
Super-resolution Fluorescence Microscopy
12.1K
Super-resolution fluorescence microscopy (SRFM) provides a better resolution than conventional fluorescence microscopy by reducing the point spread function (PSF). PSF is the light intensity distribution from a point that causes it to appear blurred. Due to PSF, each fluorescing point appears bigger than its actual size, and it is the PSF interference of nearby fluorophores that causes the blurred image. Various approaches to achieving higher resolution through SRFM have recently been...
12.1K

