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Mass Spectrometry: Complex Analysis01:21

Mass Spectrometry: Complex Analysis

1.5K
Mass spectrometry is an important technique for the identification of pure compounds. However, it has some limitations for the analysis of complex mixtures, often due to excessive fragmentation making the spectrum too complicated to decipher. Mass spectrometry can be combined with suitable separation methods in sequence, forming hyphenated methods, which are useful in the analysis of complex mixtures.
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
1.5K
Tandem Mass Spectrometry01:21

Tandem Mass Spectrometry

2.2K
Tandem mass spectrometry is a technique that uses multiple mass analyzers in series to obtain a higher selectivity and reduce chemical noise during analyte detection. Instruments with multiple analyzers separated by an interaction cell enable secondary fragmentation and selected study of the fragment ions.Secondary fragmentations occur in the interaction cell and can be induced by various factors. Fragmentation induced by collision with inert gases, such as N2, Ar, He, etc., is called...
2.2K
Mass Spectrum: Interpretation01:24

Mass Spectrum: Interpretation

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An unknown compound can be established by identifying the molecular ion peak in the mass spectrum. The molecular ion peak is often weak or absent due to the predominance of fragmentation in high-energy electron beams. In such cases, a soft-energy electron beam can be used to scan the spectrum to enhance the intensity of the molecular ion peak. Additionally, chemical ionization, field ionization, and desorption ionization spectra are used to obtain a relatively intense molecular ion peak.To...
2.6K
MALDI-TOF Mass Spectrometry01:19

MALDI-TOF Mass Spectrometry

6.4K
Mass spectrometry is a powerful characterization technique that can identify and separate a wide variety of compounds ranging from chemical to biological entities, based on their mass-to-charge ratio (m/z). The instruments that allow this detection, known as mass spectrometers, have three components: an ion source, a mass analyzer, and a detector. These spectrometers differ based on the nature of their ion source and analyzers.Matrix-assisted laser desorption ionization (MALDI) is a commonly...
6.4K
High-Resolution Mass Spectrometry (HRMS)01:15

High-Resolution Mass Spectrometry (HRMS)

2.3K
The resolution of a mass spectrometer depends on the efficiency of separating ions with different ion masses. The mass of an atom is approximated to the sum of the masses of protons and neutrons inside, considering the masses of protons and neutrons as equal. However, the masses of the proton (1.6726 × 10−24 g) and neutron (1.6749 × 10−24 g) are not truly equal. There is a minor error in the expression of atomic masses relative to the simplest atom of hydrogen. For...
2.3K
Mass Spectrometers01:16

Mass Spectrometers

8.2K
This lesson details the instrumentation of a mass spectrometer—a physical instrument to perform mass spectrometry on analyte molecules and record the characteristic mass spectra. This is achieved via three chief functions:
8.2K

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Related Experiment Video

Updated: Jan 8, 2026

Time-resolved ElectroSpray Ionization Hydrogen-deuterium Exchange Mass Spectrometry for Studying Protein Structure and Dynamics
09:18

Time-resolved ElectroSpray Ionization Hydrogen-deuterium Exchange Mass Spectrometry for Studying Protein Structure and Dynamics

Published on: April 17, 2017

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HydroBot: Software for Interactive Hydrogen/Deuterium-Exchange Mass Spectrometry Multistate Analysis.

Monika Kish1,2, Jonathan J Phillips1,2

  • 1Living Systems Institute, University of Exeter, Stocker Road, ExeterEX4 4QD, U.K.

Journal of the American Society for Mass Spectrometry
|December 18, 2025
PubMed
Summary

HydroBot is a new software for analyzing hydrogen/deuterium-exchange mass spectrometry (HDX-MS) data. It offers comprehensive tools for protein dynamics, stability, and interaction studies, especially for complex multistate and nonequilibrium experiments.

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A Hydrogen-Deuterium Exchange Mass Spectrometry HDX-MS Platform for Investigating Peptide Biosynthetic Enzymes
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A Hydrogen-Deuterium Exchange Mass Spectrometry HDX-MS Platform for Investigating Peptide Biosynthetic Enzymes

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Capillary Electrophoresis-based Hydrogen/Deuterium Exchange for Conformational Characterization of Proteins with Top-down Mass Spectrometry
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Capillary Electrophoresis-based Hydrogen/Deuterium Exchange for Conformational Characterization of Proteins with Top-down Mass Spectrometry

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Related Experiment Videos

Last Updated: Jan 8, 2026

Time-resolved ElectroSpray Ionization Hydrogen-deuterium Exchange Mass Spectrometry for Studying Protein Structure and Dynamics
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A Hydrogen-Deuterium Exchange Mass Spectrometry HDX-MS Platform for Investigating Peptide Biosynthetic Enzymes
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Capillary Electrophoresis-based Hydrogen/Deuterium Exchange for Conformational Characterization of Proteins with Top-down Mass Spectrometry
05:45

Capillary Electrophoresis-based Hydrogen/Deuterium Exchange for Conformational Characterization of Proteins with Top-down Mass Spectrometry

Published on: June 8, 2021

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Area of Science:

  • Biochemistry
  • Structural Biology
  • Computational Biology

Background:

  • Hydrogen/deuterium-exchange mass spectrometry (HDX-MS) is crucial for studying protein dynamics, stability, and interactions.
  • Existing analysis tools are limited for multistate and nonequilibrium HDX-MS experiments.

Purpose of the Study:

  • To introduce HydroBot, a novel software for comprehensive and interactive HDX-MS data analysis and visualization.
  • To provide tools for analyzing complex protein dynamics in equilibrium and nonequilibrium states.

Main Methods:

  • HydroBot offers automated uptake plotting and statistical testing for differences between protein states.
  • Includes interactive visualization modes (bar plots, Woods plots, heatmaps) and statistical tools (volcano plots, error distribution analyses).
  • Integrates clustering methods (k-means, hierarchical) for pattern discovery and scripts for structural visualization.

Main Results:

  • HydroBot enables rapid and automated data processing and robust assessment of data quality.
  • Facilitates interactive exploration of labeling differences and identification of correlated structural dynamics.
  • Streamlines the interpretation of HDX-MS data, translating processed data into biological insights.

Conclusions:

  • HydroBot is a user-friendly software that significantly enhances the analysis and interpretation of HDX-MS data.
  • It addresses limitations in current tools, particularly for complex multistate and nonequilibrium experiments.
  • The software aids in discovering patterns in protein dynamics and visualizing them in a biological context.