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Updated: Jan 15, 2026

Application of CRISPR Interference CRISPRi for Gene Silencing in Pathogenic Species of Leptospira
Published on: August 14, 2021
CRISPR interference in a Streptococcus agalactiae multi-locus sequence type 17 strain
William D Cutts1, Aidan W Flanagan2, Brice K Gorman2
1Department of Molecular and Cell Biology, University of Texas at Dallas, Dallas, Texas, USA.
Abstract:
Group B Streptococcus (GBS), a common colonizer of the human genital and gastrointestinal tracts, is a leading cause of neonatal bacterial meningitis, which can lead to severe neurological complications. The hypervirulent serotype III, sequence type 17 (ST-17) strain COH1 is strongly associated with late-onset disease due to its unique set of virulence factors. However, genetic manipulation of ST-17 strains remains challenging, limiting the ability to study key pathogenic genes. In this study, we developed a CRISPR interference (CRISPRi) system utilizing an endogenous catalytically inactivated Cas9 (dCas9) in the COH1 strain, enabling targeted and tunable gene expression knockdown. We confirmed the efficacy of this system through hemolysis assays, qPCR transcriptional analysis, and in vitro infection models using human brain endothelial cells. The CRISPRi system successfully produced phenotypic knockdowns of key virulence genes, including PI-2b, srr2, and iagA, reducing adhesion, invasion, and inflammatory responses at the blood-brain barrier (BBB). This platform enables rapid gene knockdowns for functional genomics in ST-17 GBS, enabling high-throughput screening and pathogenesis research.
Importance:
Group B Streptococcus (GBS) remains the world's leading cause of neonatal meningitis. GBS-host interactions at the blood-brain barrier (BBB) are dependent on bacterial factors, including surface factors and two-component systems. Multi-locus sequence type 17 (ST-17) GBS strains are highly associated with neonatal meningitis, and these strains harbor many virulence factors for infection at the BBB. Historically, these factors have been studied using traditional knockout mutagenesis, which has been challenging in the most common ST-17 lab strain, COH1. This study utilizes CRISPR interference (CRISPRi) to generate rapid expression knockdown. This study validates a CRISPRi-enabled COH1 dCas9 strain as a versatile tool for probing GBS pathogenesis at the BBB.
Insights
Researchers developed a CRISPR interference (CRISPRi) system to study Group B Streptococcus (GBS) pathogenesis. This tool allows for targeted gene knockdown in the hypervirulent ST-17 strain COH1, aiding research into neonatal meningitis.
Area of Science:
- Microbiology
- Genetics
- Infectious Diseases
Background:
- Group B Streptococcus (GBS) is a primary cause of neonatal bacterial meningitis.
- The hypervirulent serotype III, sequence type 17 (ST-17) strain COH1 is linked to severe disease but is genetically challenging to manipulate.
- Understanding GBS virulence factors at the blood-brain barrier (BBB) is crucial for combating neonatal meningitis.
Purpose of the Study:
- To develop a novel CRISPR interference (CRISPRi) system for targeted gene knockdown in the GBS ST-17 COH1 strain.
- To enable functional genomics and high-throughput screening of GBS virulence factors.
- To investigate GBS interactions at the BBB.
Main Methods:
- Development of a CRISPR interference (CRISPRi) system using catalytically inactivated Cas9 (dCas9) in the COH1 strain.
- Confirmation of system efficacy via hemolysis assays and qPCR transcriptional analysis.
- Assessment of gene knockdown effects in vitro using human brain endothelial cell infection models.
Main Results:
- The CRISPRi system successfully achieved tunable gene expression knockdown in ST-17 GBS.
- Phenotypic knockdowns of key virulence genes (PI-2b, srr2, iagA) were observed.
- Reduced bacterial adhesion, invasion, and inflammatory responses at the BBB were demonstrated.
Conclusions:
- The developed CRISPRi platform provides a versatile tool for genetic manipulation in ST-17 GBS.
- This system facilitates rapid functional genomics and pathogenesis research for GBS.
- The findings contribute to a better understanding of GBS virulence and potential therapeutic targets.
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