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Updated: Jan 29, 2026

High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions
Published on: March 5, 2022
High-throughput bioprinted 3D cultures for probing host-pathogen interactions in bioinspired microenvironments
Jodi Graf1, DeVonte Moore2, Catherine L Grimes2,3
1Chemical and Biomolecular Engineering, University of Delaware Newark DE USA cfromen@udel.edu akloxin@udel.edu.
This study developed a high-throughput 3D culture model to investigate immune cell responses to pathogens. The model shows that lung tissue stiffness influences macrophage behavior and bacterial infection outcomes.
Area of Science:
- Biotechnology
- Immunology
- Biomaterials Science
Background:
- The immune cell microenvironment critically regulates immune cell function and fate.
- Three-dimensional (3D) culture systems offer insights into immune responses within tissue-mimicking environments.
- Current 3D models often lack high-throughput capabilities, hindering broad application in host-pathogen interaction studies.
Purpose of the Study:
- To establish a high-throughput macrophage-bacteria co-culture model mimicking lung tissue stiffness.
- To investigate how varying microenvironment stiffness affects macrophage behavior and response to bacterial infection.
- To provide a platform for studying host-pathogen interactions and developing therapeutic strategies.
Main Methods:
- Utilized bioprinting to encapsulate and differentiate human THP-1 monocytes into macrophages within synthetic extracellular matrices (ECMs).
- Fabricated ECMs with defined polymer and peptide bioinks in a 96-well plate format to mimic healthy (compliant) and diseased (stiff) lung tissue stiffness.
- Assessed macrophage viability, immunocompetence (phenotype, phagocytosis, response to stimuli), and gene expression.
- Studied the immune response of macrophages to *Pseudomonas aeruginosa* infection in different stiffness conditions.
Main Results:
- Macrophages maintained viability and immunocompetence in the 3D culture system.
- Macrophages in stiffer (fibrosis-inspired) ECMs showed higher basal expression of inflammation and fibrosis genes compared to compliant (healthy lung-inspired) ECMs.
- In response to *P. aeruginosa*, macrophages in stiff microenvironments exhibited altered cytokine secretion (decreased IL-6/IL-1β, increased IL-10/TNF-α) compared to compliant environments.
Conclusions:
- The developed high-throughput 3D model effectively mimics lung tissue stiffness and allows for controlled study of host-pathogen interactions.
- Microenvironment stiffness significantly influences macrophage immune responses, including gene expression and cytokine profiles during bacterial infection.
- This platform facilitates understanding of bacterial infections and aids in identifying potential therapeutic strategies.
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