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A Comprehensive Protocol for Manual Segmentation of the Medial Temporal Lobe Structures
Published on: July 2, 2014
Comparison between automated and manual segmentation in computed tomography for body composition analysis.
Cintia Pereira Kuss1, Leandra Ulbricht2, Klaus Schumacher3
1Federal University of Technology-Paraná, Graduate Program in Biomedical Engineering, Av. Silva Jardim, 589, Curitiba, Brazil. cintiak@alunos.utfpr.edu.br.
Biomedical Engineering Online
|February 20, 2026
Summary
Automated body composition analysis using Identificação Automatizada da Composição Corporal (IACC) significantly reduces assessment time compared to manual methods. While accurate for adipose tissue, skeletal muscle measurements show higher variability, indicating potential for large-scale studies.
Area of Science:
- Radiology and Medical Imaging
- Biomedical Engineering
- Clinical Diagnostics
Background:
- Computed tomography (CT) at the third lumbar vertebra (L3) is the gold standard for body composition (BC) assessment.
- Manual segmentation of CT scans is time-consuming and impractical for large datasets.
- Automated methods are needed to improve efficiency in BC analysis.
Purpose of the Study:
- To compare the accuracy and efficiency of an automated body composition (BC) analysis tool, Identificação Automatizada da Composição Corporal (IACC), against manual segmentation.
- To evaluate the reproducibility and agreement of automated BC measurements.
- To assess the potential of IACC for clinical and large-scale population studies.
Main Methods:
- A retrospective cross-sectional study of 126 participants using single axial CT slices at L3.
- Manual segmentation performed using 3D Slicer, validated by a radiologist.
- Automated segmentation of skeletal muscle (MUSCLE), subcutaneous adipose tissue (SAT), and visceral adipose tissue (VAT) using IACC.
Main Results:
- IACC analysis time was ~5 minutes per scan, versus 25-30 minutes for manual segmentation.
- Excellent intra-rater reproducibility (ICC > 0.99) and high inter-rater agreement (Dice coefficients > 0.93) for SAT and VAT.
- High concordance (ICC > 0.93) for SAT and VAT, and good concordance (ICC = 0.784) for skeletal muscle.
- Skeletal muscle measurements showed greater variability and disagreement compared to adipose tissue compartments.
Conclusions:
- IACC provides accurate and efficient automated segmentation of subcutaneous and visceral adipose tissue.
- The automated tool substantially reduces analysis time for body composition assessment.
- While skeletal muscle measurements require further validation, IACC shows promise for large-scale population studies and clinical applications requiring rapid, standardized analysis.

