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Updated: Feb 26, 2026

Forward Genetic Approaches in Chlamydia trachomatis
Published on: October 23, 2013
CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis
Olusola Olagoke1,2, Timothy D Read3, Deborah Dean1,2,4,5,6
1Department of Pediatrics, Division of Infectious Diseases and Global Health, University of California San Francisco School of Medicine, San Francisco, California, USA.
None:
We present Chlamydia trachomatis Genome Assembly Pipeline (CtGAP) 2.0, an enhanced version of CtGAP, that provides a seamless installation process-eliminating the need for multiple standalone tools-and a streamlined command-line interface, introduces automatic assembly quality scoring and selection for downstream analyses, and integrates chromosome and plasmid typing along with phylogenomics.
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