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camlhmp: a simple framework for building reproducible microbial genome-based typing tools
Robert A Petit1,2, Chayse M Rowley1, Taylor R Fearing1
1Wyoming Public Health Laboratory, Wyoming Department of Health, Cheyenne, Wyoming, USA.
Microbiology Resource Announcements
|April 20, 2026
Abstract
None:
Sequence-based typing is critical for microbial genomics, yet existing tools are often developed in isolation, leading to duplicated effort, inconsistent formats, and limited community participation. To address this, we developed camlhmp (https://github.com/rpetit3/camlhmp), a framework for creating, executing, and maintaining typing tools with simple, human-readable YAML files.
