CT-based MRI distortion correction reveals systematic coordinate discrepancies in subthalamic nucleus deep brain
Ali Haluk Duzkalir1, Hanife Gulden Duzkalir2, Dogu Cihan Yildirim1
1Department of Neurosurgery, Koc University Hospital, Istanbul, Turkiye.
Clinical Neurology and Neurosurgery
|March 17, 2026
Summary
CT-based MRI distortion correction significantly shifts subthalamic nucleus (STN) coordinates for deep brain stimulation. These corrected and uncorrected targeting methods are not interchangeable for surgical planning.
Area of Science:
- Neurosurgery
- Medical Imaging
- Neurology
Background:
- Accurate subthalamic nucleus (STN) targeting is crucial for deep brain stimulation (DBS) efficacy.
- Magnetic resonance imaging (MRI) geometric fidelity is essential for precise STN targeting.
- The impact of MRI distortion correction on STN coordinates is not well understood.
Purpose of the Study:
- To evaluate if CT-based MRI distortion correction systematically alters anatomically defined STN target coordinates.
- To quantify the shifts in STN coordinates resulting from MRI distortion correction.
Main Methods:
- Retrospective analysis of 30 adult patients with normal intracranial imaging.
- Acquisition of 1-mm axial T2-weighted MRI and 1-mm brain CT scans.
- Identification of bilateral STN targets on corrected and uncorrected MRI datasets by blinded raters.
Main Results:
- Mean Euclidean distance between corrected and uncorrected STN coordinates was 1.655 mm, exceeding the 1.0 mm threshold in all patients.
- Significant shifts observed primarily along lateral (X) and anteroposterior (Y) axes.
- Consistent directional displacement of uncorrected targets (lateral, posterior, inferior) relative to corrected targets.
Conclusions:
- CT-based MRI distortion correction induces substantial and systematic shifts in STN target coordinates.
- Corrected and uncorrected MRI workflows are not interchangeable for STN DBS planning.
- This highlights the need for careful consideration of distortion correction in DBS targeting strategies.


