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Updated: Mar 25, 2026

An In Vivo Blood-brain Barrier Permeability Assay in Mice Using Fluorescently Labeled Tracers
Published on: February 26, 2018
Imaging Venous Transit Time and Blood-Brain Barrier Permeability of the Deep Brain
Wen Shi1,2, Jie Song1,2, Jiani Wu1,2
1Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Purpose:
Imaging of venous vessels with advanced pulse sequences allows the assessment of important hemodynamic parameters. Previous work has measured venous transit time (VTT) and blood-brain barrier (BBB) water permeability in cortical tissue. This study aimed to measure VTT and BBB permeability in the deep brain through imaging in the straight sinus (SS).
Methods:
Two studies were conducted. Study I measured VTT of the deep brain using a Venous-transit-time-Imaging-by-Changes-in-T1-Relaxation (VICTR) MRI sequence. The obtained VTT was used in study II to optimize the imaging parameters of Water-Extraction-with-Phase-Contrast-Arterial-Spin-Tagging (WEPCAST) MRI pulse sequence, and the permeability-surface-area product (PS) was quantified in the deep brain. Test-retest reproducibility was assessed.
Results:
SS VTT was found to be 2807.5 ± 349.5 ms, which was approximately half a second shorter than the SSS VTT (3365.0 ± 235.3 ms, p < 0.001). The SS VTT results were reproducible across repetitions, with a coefficient of variation of 2.8% ± 0.5%. The standard deviation of the VTT distribution in SS was 973.7 ± 48.1 ms, again shorter than the corresponding SSS values (1165.5 ± 37.2 ms, p < 0.001). The water extraction fraction, E, from the SS was 94.8% ± 1.9%, and the deep-brain PS was 141.3 ± 20.2 mL/100 g/min. The PS values were slightly lower than the cortical PS of 152.9 ± 20.9 mL/100 g/min (p = 0.039), and may reflect the lower vascularity in the deep-brain region. The intraclass correlation coefficient (ICC) of the deep-brain PS values from repeated runs was 0.863.
Conclusion:
This is the first study to measure two parameters associated with deep-brain physiology, specifically VTT and BBB water permeability, and provide their normative values.
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