Related Experiment Video
Updated: Apr 1, 2026

10:40
Single-Cell Resolution Three-Dimensional Imaging of Intact Organoids
Published on: June 5, 2020
18.2K
Three-dimensional organoid screening using a Leica Thunder microscope
1Photonic Microscopy Facility (PFIC) UAR AMMICa Gustave Roussy Pavillion de Recherche 2, Villejuif Cedex, Villejuif, France.
Methods in Cell Biology
|March 30, 2026
Summary
High-throughput screening of 3D organoids is now efficient using the Leica Thunder microscope and Computational Clearing. This method enhances deep imaging for biomedical research, drug discovery, and disease modeling.
Area of Science:
- Biomedical Research
- Microscopy
- 3D Tissue Models
Background:
- 3D organoids provide superior models for studying development, disease, and drug responses compared to 2D cultures.
- High-throughput imaging of complex 3D organoid structures presents significant challenges.
- Advanced imaging techniques are crucial for unlocking the full potential of organoid research.
Purpose of the Study:
- To present a validated method for high-throughput screening of 3D organoids.
- To demonstrate the utility of the Leica Thunder microscope with Computational Clearing for deep 3D imaging.
- To provide a comprehensive protocol for organoid sample preparation, imaging, and analysis.
Main Methods:
- Utilized the Leica Thunder microscope equipped with Computational Clearing technology.
- Developed and optimized a protocol for 3D organoid sample preparation.
- Established image acquisition parameters using LAS X software.
- Implemented FiJi/ImageJ for quantitative analysis of 3D organoid data.
Main Results:
- Successfully demonstrated enhanced deep imaging capabilities for 3D organoids.
- The protocol facilitates efficient and reproducible high-throughput screening.
- Computational Clearing significantly improves image quality and data acquisition depth.
Conclusions:
- The Leica Thunder microscope offers an efficient solution for high-throughput 3D organoid screening.
- This method advances biomedical research, particularly in drug discovery and disease modeling.
- The presented protocol enables robust quantitative analysis of complex 3D tissue models.

