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The pharmacogenetics of drug transporters is increasingly recognized as a critical factor influencing interindividual variability in drug absorption, distribution, and elimination. These membrane-bound proteins regulate drugs' movement across cellular barriers by actively pumping them out (efflux) or facilitating their uptake (influx). Among the major transporter families, ATP-binding cassette (ABC) and solute carrier (SLC) transporters play particularly prominent roles. Genetic polymorphisms...
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A dual sensor regulates P-glycoprotein's structural plasticity.

Michael Kamel1, Jan-Hannes Schäfer1, Valeria Jaramillo-Martinez2,3

  • 1Osnabrück University, Department of Biology/Chemistry, Structural Biology section, 49076 Osnabrück, Germany.

Biorxiv : the Preprint Server for Biology
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Summary

P-glycoprotein (P-gp) uses transmembrane helices 4 and 10 to achieve its broad substrate recognition and activity. Helix 4 senses the environment, while helix 10 recognizes substrates, enabling P-gp

Keywords:
ABC transporterABCB1ATPase activityMDR1P-gpconformational landscapecryo-EMhydrophobic environmentlipid nanodiscsverapamil

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Area of Science:

  • Membrane protein structure and function
  • Biochemistry and biophysics
  • Drug efflux mechanisms

Background:

  • P-glycoprotein (P-gp) is a crucial efflux pump with a broad substrate profile, impacting drug efficacy and resistance.
  • Understanding P-gp's polyspecificity and regulation by substrate binding and lipid environment is vital for clinical applications.
  • Previous structural data implicated transmembrane helices 4 and 10 in substrate recognition.

Purpose of the Study:

  • To elucidate the distinct roles of transmembrane helices 4 and 10 in P-glycoprotein activity and substrate recognition.
  • To investigate how the lipid environment and substrate binding modulate P-gp function.
  • To decipher the structural basis for P-gp's functional plasticity.

Main Methods:

  • Utilized cryogenic electron microscopy (cryo-EM) to study P-glycoprotein structure.
  • Employed detergent and nanodisc systems to investigate environment- and substrate-dependent phenotypes.
  • Analyzed structural data to correlate with ATPase activity and functional observations.

Main Results:

  • Deciphered distinct and unexpected roles for transmembrane helices 4 and 10 in P-gp function.
  • Identified helix 4 as an environment sensor and helix 10 as the primary substrate recognition element.
  • Provided structural explanations for differences in P-gp's ATPase activity based on helix roles.
  • Visualized the interplay between P-gp, its lipid environment, and substrates.

Conclusions:

  • P-glycoprotein exhibits a dual regulation mechanism involving helix 4 (environment sensing) and helix 10 (substrate recognition).
  • This dual mechanism underlies P-gp's functional plasticity and broad substrate specificity.
  • The findings offer insights into the intricate interplay between membrane proteins and their lipid environments.