The island biology of the host microbiome

Microbiomes perform critical functions for their hosts, and understanding microbiome variation is important for both basic and applied science. However, host traits alone cannot explain the entirety of microbiome variation, because, alongside host traits, microbiomes are shaped by multiple ecological processes. Researchers have thus turned to theories of island biology, conceptualising animal hosts as islands and animal microbiomes as metacommunities that assemble within and disperse between host islands. To develop realistic models, this host-as-island metaphor must be examined by explicitly comparing geological and host islands. Here, we critically examine the host-as-island metaphor by evaluating how microbiome variation is shaped by the four metacommunity processes that explain biodiversity on geological islands: local interspecies interactions, local selection, dispersal, and stochasticity. Key differences between host islands and geological islands include the complexity of microbiome transmission networks arising from host mobility and sociality and the capacity of hosts to evolve to control their microbiomes. We conclude with discussions of how eco-evolutionary dynamics differ between geological islands and host islands, and the reciprocal relevance of island biology and microbiome science.