Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

2.0K
Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
2.0K
Atomic Absorption Spectroscopy: Atomization Methods01:25

Atomic Absorption Spectroscopy: Atomization Methods

1.8K
Atomic Absorption Spectroscopy (AAS) atomizes samples through flame atomization or electrothermal atomization. Flame atomization typically involves a nebulizer and spray chamber assembly to combine the sample with a fuel–oxidant mixture, creating a fine aerosol mist that enters a burner. Typically, the fuel and oxidant are combined in an approximately stoichiometric ratio. However, for atoms that are easily oxidized, a fuel-rich mixture may be more advantageous. Only about 5% of the...
1.8K
Computed Tomography01:10

Computed Tomography

7.6K
Tomography refers to imaging by sections. Computed tomography (CT) is a non-invasive imaging technique that uses computers to analyze several cross-sectional X-rays to reveal minute details about structures in the body.
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
7.6K
Atomic Absorption Spectroscopy: Overview01:27

Atomic Absorption Spectroscopy: Overview

3.2K
Atomic absorption spectroscopy (AAS) is a technique used to analyze elements by measuring electromagnetic radiation (EMR) absorbed by atoms, which causes them to transition to a higher-energy orbit. The most crucial step in AAS is atomization, where the analyte is converted into gas-phase atoms, typically through a flame or furnace. Some of these atoms become thermally excited in the flame, while most remain in the ground state.
When irradiated by EMR of a particular wavelength, these...
3.2K
Atomic Absorption Spectroscopy: Instrumentation01:22

Atomic Absorption Spectroscopy: Instrumentation

2.1K
An atomic absorption spectrophotometer (AAS) comprises several components: a radiation source, an atomizer, a monochromator, and a detector. The radiation source can be a hollow-cathode lamp (HCL) or an electrodeless-discharge lamp (EDL), both of which provide a narrow emission line of the required wavelength. However, some instruments use continuum sources and high-resolution monochromators to achieve a narrow range of radiation.
The atomizer used in AAS can be either a flame atomizer or an...
2.1K
Atomic Absorption Spectroscopy: Interference01:25

Atomic Absorption Spectroscopy: Interference

2.3K
Interference leads to systematic error in atomic absorption (AA) measurements by enhancing or diminishing the analytical signal or the background. These interferences can be grouped into three main categories: spectral interference, chemical interference, and physical interference.
Spectral interference occurs when signals from other elements or molecules overlap with the analyte signal, falsely elevating or masking the analyte's absorbance. This interference can be corrected using Zeeman,...
2.3K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Accelerated design of solid bio-based foams for plastics substitutes.

Materials horizons·2024
Same author

A simple approach to produce hydrophobic biobased coatings using methylcellulose and organosolv lignin.

Soft matter·2024
Same author

Effects of atlas-based anatomy on modelled light transport in the neonatal head.

Physics in medicine and biology·2023
Same author

Propagating bands of plastic deformation in a metal alloy as critical avalanches.

Science advances·2020
Same author

Vibration controlled foam yielding.

Soft matter·2020
Same author

Emergent magnetic monopole dynamics in macroscopically degenerate artificial spin ice.

Science advances·2019
Same journal

Lingual Surface Morphology in Delphinids: Structural Adaptations to Feeding Strategies.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada·2026
Same journal

A Scalable Pathway for Plan-View TEM of 2D Materials and Surface Layers.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada·2026
Same journal

Unsupervised Segmentation and Clustering Workflow for Efficient Processing of 4D-STEM and 5D-STEM Data.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada·2026
Same journal

Development of an EDS-Based Grain Segmentation Method for MIMAS-MOX Nuclear Fuels.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada·2026
Same journal

The Fabrication of Atom Probe Tomography Specimens From Mineral Nanoplates by Focused Ion Beam Redeposition.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada·2026
Same journal

From Bone to Body: Qualitative Evaluation of Collagenous Tissues Using JFRL Staining in Normal and Pathological Conditions.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada·2026
See all related articles

Related Experiment Video

Updated: Apr 28, 2026

Atom Probe Tomography Studies on the CuIn,GaSe2 Grain Boundaries
09:51

Atom Probe Tomography Studies on the CuIn,GaSe2 Grain Boundaries

Published on: April 22, 2013

12.3K

Gaussian Process Regression Applied to Atom Probe Tomography Data Reconstruction.

Teemu Turpeinen1, Aslam Shaikh2, Tero Mäkinen2

  • 1Department of Mathematics and Systems Analysis, Aalto University, P.O. Box 15600, Aalto, Espoo 00076, Finland.

Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada
|April 27, 2026
PubMed
Summary
This summary is machine-generated.

Gaussian process regression enhances atom probe tomography reconstruction. This Bayesian inference method, particularly using Matérn kernels, offers superior data reconstruction compared to traditional techniques.

Keywords:
Bayesian inferenceatom probe tomographydata reconstructioninverse problemmachine learning

More Related Videos

Picometer-Precision Atomic Position Tracking through Electron Microscopy
15:04

Picometer-Precision Atomic Position Tracking through Electron Microscopy

Published on: July 3, 2021

7.5K
Atom Probe Tomography Analysis of Exsolved Mineral Phases
08:14

Atom Probe Tomography Analysis of Exsolved Mineral Phases

Published on: October 25, 2019

6.9K

Related Experiment Videos

Last Updated: Apr 28, 2026

Atom Probe Tomography Studies on the CuIn,GaSe2 Grain Boundaries
09:51

Atom Probe Tomography Studies on the CuIn,GaSe2 Grain Boundaries

Published on: April 22, 2013

12.3K
Picometer-Precision Atomic Position Tracking through Electron Microscopy
15:04

Picometer-Precision Atomic Position Tracking through Electron Microscopy

Published on: July 3, 2021

7.5K
Atom Probe Tomography Analysis of Exsolved Mineral Phases
08:14

Atom Probe Tomography Analysis of Exsolved Mineral Phases

Published on: October 25, 2019

6.9K

Area of Science:

  • Materials Science
  • Data Science
  • Computational Physics

Background:

  • Atom probe tomography (APT) is a powerful technique for 3D material characterization at the atomic scale.
  • Traditional reconstruction algorithms in APT can be limited by geometric assumptions and may not fully capture complex material behaviors.
  • Enhancing APT data reconstruction is crucial for accurate material analysis and discovery.

Purpose of the Study:

  • To introduce Gaussian process regression (GPR) as a novel Bayesian inference approach for improving APT data reconstruction.
  • To evaluate the performance of GPR with different kernels (radial basis function and Matérn) against standard reconstruction methods.
  • To demonstrate the potential of GPR for reconstructing simulated APT data, including surface diffusion effects.

Main Methods:

  • Simulated evaporation of single-crystal and polycrystalline specimens was performed.
  • Radial basis function and Matérn kernels within a GPR framework were employed for data reconstruction.
  • Reconstructed data was compared with results from the standard wide field-of-view reconstruction algorithm.

Main Results:

  • Both radial basis function and Matérn kernels in GPR outperformed the traditional geometry-based reconstruction algorithm.
  • The Matérn kernel demonstrated particular effectiveness in reconstructing long-range periodic datasets.
  • GPR successfully incorporated surface diffusion effects into the reconstruction process.

Conclusions:

  • Gaussian process regression offers a flexible and powerful Bayesian approach to enhance atom probe tomography data reconstruction.
  • The findings highlight the potential of GPR for more accurate and detailed material analysis using APT.
  • This study provides a foundation for applying Bayesian inference methods to experimental APT data.