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Updated: May 5, 2026

Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS
Published on: March 14, 2013
Data Analysis in Extreme Resolution Mass Spectrometry Untargeted Metabolomics
Marta Sousa Silva1, Francisco Traquete1, João Luz1
1FT-ICR and Structural Mass Spectrometry Laboratory, Biosystems and Integrative Sciences Institute (BioISI), Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal.
Mass spectrometry (MS)-based metabolomics offers insights into biological systems. This chapter details data analysis methods, from preprocessing to bioinformatics, addressing challenges posed by large datasets from high-resolution instruments.
Area of Science:
- Biochemistry
- Bioinformatics
- Analytical Chemistry
Background:
- Mass spectrometry (MS)-based metabolomics is crucial for understanding biochemical processes and identifying biomarkers.
- High-resolution mass spectrometers generate vast datasets, presenting significant data processing and interpretation challenges.
Purpose of the Study:
- To provide a comprehensive overview of current methodologies in MS-based metabolomics data analysis.
- To address challenges in data processing and interpretation for high-resolution MS data.
Main Methods:
- Data preprocessing and pretreatment techniques.
- m/z extraction and annotation strategies.
- Univariate and multivariate statistical analyses and data visualization.
Main Results:
- Discussion of key considerations for ensuring data quality in metabolomics.
- Highlighting the role of bioinformatics in pathway analysis and metabolite identification.
- Emphasis on the impact of FT-ICR mass spectrometry for extreme resolution and mass accuracy.
Conclusions:
- MS-based metabolomics data analysis requires robust computational workflows.
- Emerging trends like AI and real-time processing are shaping the future of metabolomics.
- Effective data interpretation is vital for advancing biological understanding and biomarker discovery.
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