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Quantitative Optical Microscopy: Measurement of Cellular Biophysical Features with a Standard Optical Microscope
Published on: April 7, 2014
Protocol for natural and biomedical image processing in the hypercomplex domain using the 2D orthogonal planes split
Nektarios A Valous1, Eckhard Hitzer2, Dragoş Duşe3
1Applied Tumor Immunity Clinical Cooperation Unit, National Center for Tumor Diseases (NCT) Heidelberg, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 460, Heidelberg 69120, Germany; Medical Faculty Heidelberg, Heidelberg University, Department of Medical Oncology, Heidelberg University Hospital (UKHD), Im Neuenheimer Feld 672, Heidelberg 69120, Germany; Center for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, Heidelberg 69120, Germany.
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We present a protocol for processing natural and biomedical images in the hypercomplex domain. First, the protocol converts images into quaternion matrices. It then applies the 2D orthogonal planes split to perform re-colorization, de-colorization, contrast enhancement, re-staining, and stain separation. Finally, it uses post-processing operations to generate the output. The resulting output supports qualitative assessment and downstream processing in computer vision and computational pathology pipelines. For details and literature comparisons, please refer to Valous et al.1.
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