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Aptamer-based DNA nanoswitches for multiplexed protein detection.

Sravya Kovvali1, Camryn A Beckles1,2, Arun Richard Chandrasekaran1,3

  • 1The RNA Institute, University at Albany, State University of New York, Albany, NY, 12222 USA.

Biorxiv : the Preprint Server for Biology
|May 18, 2026
PubMed
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Researchers developed a new method for detecting proteins using aptamers and DNA nanoswitches. This simple, sensitive, and specific platform shows promise for clinical diagnostics and biomedical research.

Area of Science:

  • Biotechnology
  • Molecular Biology
  • Nanotechnology

Background:

  • Protein detection is crucial for clinical diagnostics, healthcare, and research.
  • Existing methods can be complex or lack sensitivity and specificity.
  • Modular platforms offer a versatile approach to biosensing.

Purpose of the Study:

  • To develop a simple, modular platform for sensitive and specific protein detection.
  • To combine aptamer-based recognition with DNA nanoswitch technology.
  • To demonstrate the platform's capability for dual protein detection.

Main Methods:

  • Utilized aptamer-based recognition for targeting specific proteins.
  • Employed conformationally-responsive DNA nanoswitches for signal transduction.

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  • Integrated aptamers and nanoswitches into a modular detection system.
  • Performed dual detection of thrombin and Vascular Endothelial Growth Factor (VEGF).
  • Main Results:

    • Achieved simple, sensitive, and specific detection of target proteins.
    • Demonstrated successful dual detection of thrombin and VEGF.
    • The DNA nanoswitch platform showed high responsiveness to protein binding.

    Conclusions:

    • The developed aptamer-DNA nanoswitch platform offers a promising tool for protein detection.
    • This modular approach facilitates sensitive and specific analysis of clinically relevant proteins.
    • The system has potential applications in diagnostics, healthcare, and biomedical research.