Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Potential Due to a Polarized Object01:29

Potential Due to a Polarized Object

A neutral atom consists of a positively charged nucleus surrounded by a negatively charged electron cloud. When placed in an external electric field, the external electric force pulls the electrons and nucleus apart, opposite to the intrinsic attraction between the nucleus and the electrons. The opposing forces balance each other with a slight shift between the center of masses of the nucleus and the electron cloud, resulting in a polarized atom. On the other hand, a few molecules, like water,...
Intermolecular Forces03:13

Intermolecular Forces

Atoms and molecules interact through bonds (or forces): intramolecular and intermolecular. The forces are electrostatic as they arise from interactions (attractive or repulsive) between charged species (permanent, partial, or temporary charges) and exist with varying strengths between ions, polar, nonpolar, and neutral molecules. The different types of intermolecular forces are ion–dipole, dipole–dipole, hydrogen bonds, and dispersion; among these, dipole–dipole, hydrogen bonds, and dispersion...
Intermolecular Forces03:13

Intermolecular Forces

Atoms and molecules interact through bonds (or forces): intramolecular and intermolecular. The forces are electrostatic as they arise from interactions (attractive or repulsive) between charged species (permanent, partial, or temporary charges) and exist with varying strengths between ions, polar, nonpolar, and neutral molecules. The different types of intermolecular forces are ion–dipole, dipole–dipole, hydrogen bonds, and dispersion; among these, dipole–dipole, hydrogen bonds, and dispersion...
Molecular Geometry and Dipole Moments02:36

Molecular Geometry and Dipole Moments

The VSEPR theory can be used to determine the electron pair geometries and molecular structures as follows:
Bond Polarity, Dipole Moment, and Percent Ionic Character02:48

Bond Polarity, Dipole Moment, and Percent Ionic Character

Bond Polarity
Molecular Shape and Polarity03:37

Molecular Shape and Polarity

Dipole Moment of a Molecule

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

LacI strikes a balance between stability and inducibility.

Nucleic acids research·2026
Same author

plotXVG: Batch Generation of Publication-Quality Graphs from GROMACS Output.

Journal of chemical information and modeling·2026
Same author

Beyond Partitioning: Using Force Field Science to Evaluate Electrostatics Models.

Journal of chemical theory and computation·2026
Same author

Correction to "Impact of Combination Rules, Level of Theory, and Potential Function on the Modeling of Gas- and Condensed-Phase Properties of Noble Gases".

Journal of chemical theory and computation·2025
Same author

Point + Gaussian charge model for electrostatic interactions derived by machine learning.

Physical chemistry chemical physics : PCCP·2025
Same author

Modelling Population-Level Hes1 Dynamics: Insights from a Multi-framework Approach.

Bulletin of mathematical biology·2025
Same journal

Continuous Information Descriptors for Electron Localization: Relativistic Spatial Responses, Nonadditivity, and Chemical Bonding.

Journal of chemical theory and computation·2026
Same journal

Determining Quantum Mechanical Methods Suitable for Quantitative Modeling of Hydrogen Atom Transfer by Halogen Atoms.

Journal of chemical theory and computation·2026
Same journal

Predicting Solvation Free Energies of Molecules and Ions via First-Principles and Machine-Learning Molecular Dynamics.

Journal of chemical theory and computation·2026
Same journal

Connection between <i>GW</i> and Extended Coupled Cluster.

Journal of chemical theory and computation·2026
Same journal

Resolving Local and Global Conformational Heterogeneity of the Human Intrinsically Disordered Proteome.

Journal of chemical theory and computation·2026
Same journal

Molecular Modeling of Surfactant Interaction on Phospholipid Bilayers Mimicking Corneal Epithelium.

Journal of chemical theory and computation·2026
See all related articles

Related Experiment Video

Updated: May 25, 2026

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies
07:31

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies

Published on: September 1, 2023

Bayesian Modeling of Polarizable Water: Lessons for Force Field Development.

Alfred T Nordman1, Stefan Engblom2,3, David van der Spoel1

  • 1Department of Cell and Molecular Biology, Uppsala University, Uppsala 751 23, Sweden.

Journal of Chemical Theory and Computation
|May 23, 2026
PubMed
Summary
This summary is machine-generated.

Quantifying uncertainties in molecular dynamics simulations is crucial. Bayesian inference applied to polarizable water models shows that parameter uncertainty is reduced by considering diverse observables, improving model accuracy.

More Related Videos

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

Related Experiment Videos

Last Updated: May 25, 2026

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies
07:31

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies

Published on: September 1, 2023

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

Area of Science:

  • Computational chemistry and materials science.
  • Development of accurate molecular models for simulations.

Background:

  • Molecular dynamics simulations require accurate models and quantified prediction uncertainties.
  • Current methods often neglect parameter uncertainties, impacting model reliability.
  • Previous work developed Bayesian three-point water models, highlighting dependence on reference observables.

Purpose of the Study:

  • Extend Bayesian inference to polarizable water models (SWM4-NDP).
  • Investigate the impact of different van der Waals functional forms and inference observables.
  • Assess the role of explicit polarization in reducing parameter uncertainty.

Main Methods:

  • Applied Bayesian inference and Markov-chain Monte Carlo sampling to the SWM4-NDP polarizable water model.
  • Compared two van der Waals functional forms (Lennard-Jones 12-6 and Wang-Buckingham).
  • Trained models using gas-phase dimer energies and compared with Bayesian inference results.

Main Results:

  • Two van der Waals functional forms showed similar performance but favored different observables.
  • Explicit polarization did not significantly reduce parameter uncertainty for the selected observables.
  • Bayesian inference yielded optimal parameters similar to those from gas-phase dimer training for Lennard-Jones 12-6.
  • Wang-Buckingham potential trained on gas-phase data was unstable, unlike the Bayesian counterpart.

Conclusions:

  • Force field parameter uncertainty quantification is essential for reliable molecular simulations.
  • A diverse set of observables is necessary for robust force field development.
  • Bayesian inference provides a robust framework for developing accurate and reliable polarizable water models.