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Updated: May 28, 2026

Lateral Root Inducible System in Arabidopsis and Maize
Published on: January 14, 2016
QTL qLDC5 regulates primary root branching in an auxin-dependant manner
Lam Thi Dinh1, Bipin K Pandey2, Yoshiaki Ueda3
1Department of Applied Biology and Food Sciences, Faculty of Agriculture and Life Science, Hirosaki University, Hirosaki, Aomori, 036-8561, Japan.
This study reveals that a specific quantitative trait locus (QTL), qLDC5, enhances lateral root density in rice by influencing both initiation and elongation. This genetic factor coordinates gibberellin, auxin, and terpene pathways for improved nutrient acquisition.
Area of Science:
- Plant Biology
- Genetics
- Agronomy
Background:
- Lateral root (LLR) density is crucial for rice root architecture and nutrient uptake, especially in low-phosphorus soils.
- Genotypic variations in LLR density exist, with a key quantitative trait locus (QTL) qLDC5 identified in the DJ123 landrace.
Purpose of the Study:
- To investigate the genetic and physiological basis of LLR density variation in rice.
- To understand the role of qLDC5 in regulating lateral root development and its underlying molecular mechanisms.
Main Methods:
- X-ray micro-computed tomography for non-destructive root imaging.
- Field experiments to validate QTL effects.
- Developmental analyses of lateral root primordia.
- Transcriptome analysis to identify regulatory networks.
Main Results:
- LLR densities on primary and crown roots are correlated and under similar genetic control.
- The qLDC5 locus significantly increases LLR density by enhancing lateral root primordia initiation and elongation.
- OsYUCCA2 and OsARF15 genes within the qLDC5 region are upregulated, suggesting auxin involvement.
- Differential gene expression indicates coordination of gibberellin, auxin, and terpene pathways.
Conclusions:
- The qLDC5 QTL plays a significant role in increasing LLR density in rice.
- LLR density is regulated by a complex interplay of hormonal pathways, including gibberellin and auxin.
- Understanding these pathways can lead to breeding strategies for improved rice root systems and nutrient acquisition.
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