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Related Concept Videos

Computed Tomography01:10

Computed Tomography

Tomography refers to imaging by sections. Computed tomography (CT) is a non-invasive imaging technique that uses computers to analyze several cross-sectional X-rays to reveal minute details about structures in the body.
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
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Imaging Studies III: Computed Tomography01:27

Imaging Studies III: Computed Tomography

DefinitionComputed Tomography (CT) of the genitourinary (GU) tract is a non-invasive imaging modality that utilizes X-rays and computer processing to generate detailed cross-sectional images of the urinary system, encompassing the kidneys, ureters, bladder, and adjacent structures such as the adrenal glands.PurposeCT scans of the GU tract serve several diagnostic and therapeutic purposes, including:Diagnosis of Urinary Tract Diseases: Detects kidney stones, tumors, cysts, and congenital...

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Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages
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Distributed computing for the reconstruction of multi-terabyte tomographic X-ray imaging datasets.

Thorbjørn Erik Køppen Christensen1, Frederik Holm Gjørup2, Mads Ry Vogel Jørgensen2

  • 1DTU Compute, DTU 324, Kongens Lyngby, Denmark.

Journal of Synchrotron Radiation
|June 2, 2026
PubMed
Summary
This summary is machine-generated.

A new program enables reconstruction of large tomographic datasets using CPU or GPU clusters. This high-performance computing solution successfully processed a 24000-pixel wide dataset, advancing scientific imaging.

Keywords:
big datamaterials sciencereconstructiontomography

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Area of Science:

  • Scientific Imaging
  • High-Performance Computing
  • Data Processing

Background:

  • Tomographic datasets are rapidly increasing in size due to advancements in camera technology and synchrotron light sources.
  • Existing reconstruction methods struggle to efficiently process these large-scale datasets on high-performance computing (HPC) systems.

Purpose of the Study:

  • To develop and present a novel program for reconstructing large tomographic datasets.
  • To enable the distribution of reconstruction processes across CPU- and GPU-powered clusters for enhanced efficiency.

Main Methods:

  • Implementation of a parallelized reconstruction program adaptable to both CPU and GPU clusters.
  • Testing and validation of the program on a significantly large dataset (24000 pixels wide).

Main Results:

  • Successful reconstruction of a 24000-pixel wide tomographic dataset was achieved.
  • The program demonstrated efficient data distribution and processing capabilities on HPC systems.
  • The developed pipeline is now the default reconstruction method at the DanMAX beamline, MAX IV synchrotron.

Conclusions:

  • The presented program offers a scalable and efficient solution for reconstructing large tomographic datasets.
  • Its successful implementation at a major synchrotron facility highlights its practical utility and impact on scientific research.
  • Reconstructions generated by this pipeline have been published in peer-reviewed journals, validating its performance.