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4D Imaging of Brown Algal Cells
Marie Zilliox1, Bénédicte Charrier1
1CNRS, ENS de Lyon, Institute of Functional Genomics of Lyon (IGFL), UMR 5242, Morphogenesis of Brown Algae team, Lyon, France.
Bio-Protocol
|July 10, 2026
Summary
A new fluorochrome, styryl benzoindoleninium sulfonate (SBIS), enables detailed 4D in vivo imaging of brown algal cell shape. This protocol overcomes challenges posed by pigments and seawater, allowing long-term observation of algal development.
Area of Science:
- Marine Biology
- Cell Biology
- Microscopy
Background:
- In vivo 3D imaging of brown algae is hindered by light-diffracting pigments (fucoxanthin, chlorophyll) and high-salinity seawater.
- Conventional fluorescence microscopy limits 4D (x, y, z, t) imaging of brown algal developmental processes.
- Existing fluorochromes like calcofluor white (CFW) have limitations in depth penetration and potential for aggregation in seawater.
Purpose of the Study:
- To develop and detail a protocol for robust, multicolor in vivo 4D imaging of brown algal cell shape.
- To introduce and validate a new orange-emitting fluorochrome, styryl benzoindoleninium sulfonate (SBIS), for plasma membrane labeling.
- To enable long-term, non-toxic live imaging of brown algal development using confocal and light sheet microscopy.
Main Methods:
- Developed a step-by-step protocol for labeling brown algal tissues with SBIS.
- Optimized mounting techniques for 3D confocal and light sheet time-lapse microscopy.
- Established imaging parameters to minimize toxicity and enhance signal-to-noise ratio for brown algal cell visualization.
Main Results:
- SBIS effectively labels the plasma membrane of brown algal cells, enabling multicolor imaging.
- The protocol allows visualization of brown algal cells up to 25 μm thickness and for up to 7 days.
- Successful 4D imaging was demonstrated in various brown algae species, including *Ectocarpus* sp., *Sphacelaria rigidula*, and *Saccharina latissima*.
Conclusions:
- The SBIS protocol provides a robust method for 4D visualization of brown algal cell shape during growth.
- This technique overcomes previous imaging limitations, offering broad applications for cellular-level studies in brown algae.
- The optimized protocol supports live in vivo imaging without interfering with brown algal development.

