Related Experiment Videos
Integrative Network Toxicology, Machine Learning, Single-Cell Analysis, scTenifoldKnk-Based Virtual Knockout, and
Tianxi Yan1, Qiqi He1, Xueli Shi1
1Zhuang Medicine College, Guangxi University of Chinese Medicine, Nanning 530001, China.
International Journal of Molecular Sciences
|July 15, 2026
Summary
This study explored potential molecular links between the artificial sweetener aspartame and rheumatoid arthritis (RA). It identified 16 core genes, including HLA-DRB1, suggesting a hypothesis-generating association requiring further validation.
Area of Science:
- Computational biology and bioinformatics
- Immunogenetics
- Molecular toxicology
Background:
- The relationship between aspartame consumption and rheumatoid arthritis (RA) is not well understood.
- Aspartame is a common artificial sweetener with potential biological targets.
- RA is a chronic autoimmune disease affecting joints, with complex genetic and environmental factors.
Purpose of the Study:
- To investigate potential molecular connections between aspartame targets and RA-associated gene networks.
- To identify core genes and pathways potentially linking aspartame to RA pathogenesis.
- To generate hypotheses for future experimental and clinical research.
Main Methods:
- Integration of multiple RA transcriptomic datasets (GEO: GSE55235, GSE55457, GSE77298) with batch correction.
- Identification of differentially expressed genes (DEGs) in RA and intersection with predicted aspartame targets.
- Machine learning (113 algorithms) to identify optimal multigene diagnostic models and core genes.
- Virtual knockout of HLA-DRB1 and molecular docking to assess aspartame-HLA-DRB1 interaction.
Main Results:
- Forty-four intersected genes linked predicted aspartame targets with RA DEGs.
- A random forest plus partial least-squares generalized linear model (RF + plsRglm) identified 16 core genes.
- Network analysis revealed gene distribution across immune, inflammatory, metabolic, and other modules.
- Molecular docking indicated potential interaction between aspartame and HLA-DRB1 (binding energy -6.7 kcal/mol).
Conclusions:
- This integrative analysis suggests a hypothesis-generating association between aspartame-related targets and RA molecular networks, involving HLA-DRB1 and other core genes.
- The findings highlight potential roles in immune/antigen processing, inflammation, and extracellular matrix remodeling.
- Further experimental, epidemiological, and biophysical validation is required to establish causality.
Related Concept Videos
Genome-wide Association Studies-GWAS
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
The JAK-STAT Signaling Pathway
Several cytokine receptors have tightly bound Janus kinase or JAK proteins attached at their cytosolic tail. Small signaling molecules such as cytokines, growth hormones, or prolactins bind to the cytokine receptors and initiate their dimerization. The dimerization brings the cytosolic JAKs together that trans-phosphorylate and activates each other. The activated JAKs now phosphorylate cytosolic tails of the cytokine receptors, which serve as binding sites for adaptor proteins such as SH2...