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Published on: January 7, 2019
Helicolysins Emerge as a New Family of Metzincin Metallopeptidases in Host-pathogen Interactions
Arturo Rodríguez-Banqueri1, Theodoros Goulas2, Marina Girbal-González3
1Proteolysis Laboratory, Department of Structural Biology, Molecular Biology Institute of Barcelona (CSIC), Barcelona Science Park, c/Baldiri Reixac, 15-21, 08028 Barcelona, Catalonia, Spain.
Abstract:
The Helicobacter pylori Hom group of outer-membrane proteins (OMPs) has been implicated in virulence-related processes. Here, we present a structural and functional characterization of HomA from H. pylori strain 26695. Comparative in vivo analyses of the wild-type strain and a homA deletion mutant demonstrate a role for HomA in focal adhesion kinase phosphorylation at Y397 and in bacterial adhesion to human leukaemia-derived MEC-1 cells. Recombinant production of several HomA variants identified a soluble ectodomain (ECDHomA) that harbours the conserved zinc-binding motif of metzincin metallopeptidases (MPs) and displays dimerization capacity, acid resistance, and immunomodulatory activity by triggering a pro-inflammatory response in Raji human B-lymphoblastoid cancer cells. Site-directed mutagenesis of the zinc-binding motif confirmed its contribution to zinc coordination and thermal stability. Structural analysis of ECDHomA revealed a two-domain organization comprising an N-terminal accessory β-sandwich domain (ND) and a C-terminal catalytic domain (CD), in which a non-canonical 'Thr-turn' replaces the hallmark metzincin 'Met-turn'. Integrating bioinformatics with AI-based structure predictions uncovered putative HomA homologues across 44 proteomes, predominantly from Gram-negative bacteria. Structural and biochemical characterization of the closest non-Helicobacter homologue from the oral pathogen Capnocytophaga canimorsus, dubbed 'canilysin', revealed an architecture equivalent to ECDHomA and highly specific MP activity. Together, these findings define the Hom group and canilysin as helicolysins, a previously uncharacterized metzincin family distinguished by a conserved Thr-turn and an accessory ND, and implicates these proteins in host-pathogen interactions, adhesion, and immunomodulation.
Insights
The study characterizes Helicobacter pylori HomA, revealing its role in bacterial adhesion and immune response modulation. HomA and related proteins, termed helicolysins, represent a new metallopeptidase subfamily involved in host-pathogen interactions.
Area of Science:
- Microbiology
- Structural Biology
- Immunology
Background:
- The Helicobacter pylori Hom family of outer-membrane proteins (OMPs) is linked to bacterial virulence.
- Understanding HomA's structure and function is crucial for elucidating H. pylori pathogenesis.
Purpose of the Study:
- To structurally and functionally characterize HomA from H. pylori.
- To investigate HomA's role in bacterial adhesion and host cell signaling.
- To define a new subfamily of metallopeptidases.
Main Methods:
- Comparative in vivo analyses of wild-type and homA deletion mutant strains.
- Recombinant protein production and characterization of HomA ectodomain (ECDHomA).
- Site-directed mutagenesis, structural analysis (X-ray crystallography), bioinformatics, and AI-based structure prediction.
- Biochemical characterization of a Capnocytophaga canimorsus homologue (canilysin).
Main Results:
- HomA is involved in focal adhesion kinase phosphorylation and bacterial adhesion to human cells.
- ECDHomA exhibits dimerization, acid resistance, and immunomodulatory activity, inducing pro-inflammatory responses.
- Structural analysis revealed a two-domain organization with a unique 'Thr-turn'.
- HomA homologues (helicolysins) were identified across various bacteria, including canilysin from C. canimorsus, which possesses specific metallopeptidase activity.
Conclusions:
- The Hom family and canilysin constitute a new metzincin subfamily, helicolysins, characterized by a conserved Thr-turn and accessory N-terminal domain.
- Helicolysins are implicated in host-pathogen interactions, bacterial adhesion, and immune modulation.
- This work provides insights into the structure, function, and evolutionary significance of this protein family.
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