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Updated: Oct 26, 2026

Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
Paralytic shellfish toxin production in Alexandrium minutum (Dinophyceae): Insights from omics integration using
Lou Mary1, Julien Quere1, Marie Latimier1
1Ifremer, DYNECO PELAGOS, Plouzané, France.
Abstract:
Paralytic shellfish toxins (PSTs) are produced by certain species of cyanobacteria and dinoflagellates. Part of the PST biosynthetic pathway has been elucidated in cyanobacteria, and the implication of some sxt genes has been confirmed by experimental studies. Contrary to cyanobacteria, knowledge about PST biosynthesis in dinoflagellates is more limited and generally restricted to comparative studies with the cyanobacterial pathway. To investigate the specificity of the PST pathway in dinoflagellates, 16 toxigenic and nontoxigenic Alexandrium minutum strains from a recombinant cross were compared, without prior assumption about genes or metabolites involved in PST synthesis, using an integrative approach combining untargeted metabolomic and transcriptomic data. Among the 60 most distinguishing transcripts between toxigenic and non-toxigenic strains, only three sxt genes were present: sxtA4, sxtG, and sxtI. In contrast, non-sxt homologs were detected as highly discriminant between these two phenotypes. More specifically, a phyH homolog may act as the analog of the sxtS gene observed in cyanobacteria. Moreover, we identified four putative synthetic PST intermediates. Among these, Int-C'2 correlated with the toxic phenotype, whereas three others were detected in both toxigenic and nontoxigenic strains, suggesting that these strains may share some parts of the biosynthetic pathway. Finally, our analyses identified both horizontally gained sxt genes and endogenous genes, including the candidate gene phyH, as candidate components of the PST biosynthetic pathway in A. minutum.
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