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Correlation of two-hybrid affinity data with in vitro measurements
J Estojak1, R Brent, E A Golemis
1Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111, USA.
Molecular and Cellular Biology
|October 1, 1995
Summary
This study calibrated the interaction trap, a method for studying protein-protein interactions. Results show two-hybrid systems generally correlate with biochemical methods but caution is advised when interpreting interaction strengths.
Area of Science:
- Molecular Biology
- Biochemistry
Background:
- Two-hybrid systems are widely used to study protein-protein interactions.
- The quantitative accuracy of two-hybrid methods compared to biochemical assays is not well understood.
Purpose of the Study:
- To calibrate the interaction trap using specific reporter systems.
- To assess the correlation between interaction strength measured by two-hybrid assays and in vitro biochemical methods.
Main Methods:
- Utilized lexAop-LEU2 and lexAop-lacZ reporter systems.
- Employed Myc-Max-Mxi1 helix-loop-helix proteins and lambda cI repressor variants for calibration.
Main Results:
- Two-hybrid interaction strength generally correlated with in vitro measurements, distinguishing high, intermediate, and low affinities.
- No single reporter linearly reflected in vitro affinity; some showed thresholds for strong interactions.
- Observed directionality effects, where apparent interaction strength varied with the reporter used.
Conclusions:
- Two-hybrid systems provide a generally reliable, albeit not perfectly linear, measure of protein interaction affinity.
- Caution is recommended when interpreting quantitative interaction affinities from two-hybrid experiments due to reporter variability and potential directionality.
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