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PROFILER: a tool for automatic searching of internally maintained databases

R Blevins1, J Aaronson, J Myerson

  • 1Department of Bioinformatics, Merck Research Laboratories, Rahway, NJ 07065, USA. blevins@merck.com

Computer Applications in the Biosciences : CABIOS
|December 1, 1995
PubMed
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The BIOINFORMATICS PROFILER simplifies genome sequence analysis with automated tasks and user-friendly HTML output. This tool facilitates efficient searching of databases like GenBank and protein motifs.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Daily influx of new genome sequence data requires efficient analysis tools.
  • Existing methods for genome analysis can be complex and time-consuming.

Purpose of the Study:

  • To introduce the BIOINFORMATICS PROFILER, a novel application designed to streamline genome sequence analysis.
  • To provide an intuitive platform for managing and executing bioinformatics tasks.

Main Methods:

  • Development of a graphical user interface for task definition.
  • Implementation of automated, user-defined nightly task execution.
  • Integration of hypertext (HTML) for accessible results presentation.

Main Results:

Related Experiment Videos

  • The BIOINFORMATICS PROFILER simplifies the analysis of daily genome sequence information.
  • Supported tasks include BLAST, FastA, keyword searching, GenBank examination, and protein motif searching.
  • Automated email notifications alert users to found search results.

Conclusions:

  • The BIOINFORMATICS PROFILER enhances the efficiency of genome sequence data analysis.
  • Its user-friendly interface and comprehensive task support facilitate rapid discovery in bioinformatics.