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Journal of the American Statistical Association|March 29, 2024
Prior-Preconditioned Conjugate Gradient Method for Accelerated Gibbs Sampling in "Large <i>n</i>, Large <i>p</i>" Bayesian Sparse RegressionAkihiko Nishimura, Marc A SuchardBayesian Analysis|May 21, 2024
Shrinkage with shrunken shoulders: Gibbs sampling shrinkage model posteriors with guaranteed convergence ratesAkihiko Nishimura, Marc A SuchardJournal of the American Statistical Association|August 11, 2025
Zigzag path connects two Monte Carlo samplers: Hamiltonian counterpart to a piecewise deterministic Markov processAkihiko Nishimura, Zhenyu Zhang, Marc A SuchardStatistics in Medicine|January 16, 2023
Adjusting for both sequential testing and systematic error in safety surveillance using observational data: Empirical calibration and MaxSPRTMartijn J Schuemie, Fan Bu, Akihiko Nishimura, et al.Molecular Biology and Evolution|November 11, 2023
Shrinkage-based Random Local Clocks with Scalable InferenceAlexander A Fisher, Xiang Ji, Akihiko Nishimura, et al.Journal of the American Medical Informatics Association : JAMIA|October 27, 2025
Transfer-learning on federated observational healthcare data for prediction models using Bayesian sparse logistic regression with informed priorsKelly Mohe Li, Jenna Marie Reps, Akihiko Nishimura, et al.Molecular Biology and Evolution|May 28, 2020
Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical PhylogeneticsXiang Ji, Zhenyu Zhang, Andrew Holbrook, et al.Genetics|March 23, 2005
Stochastic models for horizontal gene transfer: taking a random walk through tree spaceMarc A SuchardPlos Computational Biology|August 28, 2023
Accelerating Bayesian inference of dependency between mixed-type biological traitsZhenyu Zhang, Akihiko Nishimura, Nídia S Trovão, et al.Bioinformatics (Oxford, England)|April 17, 2009
Many-core algorithms for statistical phylogeneticsMarc A Suchard, Andrew RambautPageof 42