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Nature Biotechnology|December 25, 2019
Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteinsJase Gehring, Jong Hwee Park, Sisi Chen, et al.Genome Biology|March 18, 2011
Improving RNA-Seq expression estimates by correcting for fragment biasAdam Roberts, Cole Trapnell, Julie Donaghey, et al.Bio-Protocol|March 4, 2021
Reference-free Association Mapping from Sequencing Reads Using k-mersZakaria Mehrab, Jaiaid Mobin, Ibrahim Asadullah Tahmid, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
<i>Monod</i>: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing dataGennady Gorin, Tara Chari, Maria Carilli, et al.Nature Methods|November 7, 2025
Monod: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing dataGennady Gorin, Tara Chari, Maria Carilli, et al.Genomics|September 14, 2016
Transcriptomic response of Drosophila melanogaster pupae developed in hypergravityShannon Hateley, Ravikumar Hosamani, Shilpa R Bhardwaj, et al.Nature Methods|June 6, 2017
Differential analysis of RNA-seq incorporating quantification uncertaintyHarold Pimentel, Nicolas L Bray, Suzette Puente, et al.Bioinformatics Advances|January 12, 2024
Quantifying orthogonal barcodes for sequence census assaysA Sina Booeshaghi, Kyung Hoi Joseph Min, Jase Gehring, et al.Nucleic Acids Research|June 25, 2004
VISTA: computational tools for comparative genomicsKelly A Frazer, Lior Pachter, Alexander Poliakov, et al.Medrxiv : the Preprint Server for Health Sciences|July 3, 2026
TCIA Radiology Image Processing for AI and RadiomicsJoseph Rich, Raphi Kang, David Jin, et al.Pageof 20