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Bioinformatics (Oxford, England)|February 22, 2015
CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributionsAbdelmoneim Amer Desouki, Florian Jarre, Gabriel Gelius-Dietrich, et al.
Molecular Biology and Evolution|April 18, 2014
PopGenome: an efficient Swiss army knife for population genomic analyses in RBastian Pfeifer, Ulrich Wittelsbürger, Sebastian E Ramos-Onsins, et al.
Human Molecular Genetics|August 14, 2003
A unification of mosaic structures in the human genomeMartin J Lercher, Araxi O Urrutia, Adam Pavlícek, et al.
BMC Evolutionary Biology|August 12, 2009
Does negative auto-regulation increase gene duplicability?Tobias Warnecke, Guang-Zhong Wang, Martin J Lercher, et al.
Plos Biology|October 19, 2021
Deep learning allows genome-scale prediction of Michaelis constants from structural featuresAlexander Kroll, Martin K M Engqvist, David Heckmann, et al.
Nature Communications|May 15, 2023
A general model to predict small molecule substrates of enzymes based on machine and deep learningAlexander Kroll, Sahasra Ranjan, Martin K M Engqvist, et al.
Bioinformatics Advances|May 22, 2026
MPore: database-driven identification of active methyltransferases in prokaryotic genomes from nanopore sequencingAzlan Nisar, Lars Vogelgsang, Sebastian Fuchs, et al.
Nucleic Acids Research|May 23, 2019
Evolview v3: a webserver for visualization, annotation, and management of phylogenetic treesBalakrishnan Subramanian, Shenghan Gao, Martin J Lercher, et al.
Nucleic Acids Research|June 15, 2012
EvolView, an online tool for visualizing, annotating and managing phylogenetic treesHuangkai Zhang, Shenghan Gao, Martin J Lercher, et al.
Plos Computational Biology|April 19, 2017
Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removalClaus Jonathan Fritzemeier, Daniel Hartleb, Balázs Szappanos, et al.
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