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Biorxiv : the Preprint Server for Biology|January 9, 2026
A Neyman-Pearson Framework for Modeling Cellular Decision Making Using Single-Cell TNF-NF-κB Signaling DataAli Emadi, Tomasz Lipniacki, Andre Levchenko, et al.Biology|December 22, 2023
Single-Cell Measurements and Modeling and Computation of Decision-Making Errors in a Molecular Signaling System with Two Output MoleculesAli Emadi, Tomasz Lipniacki, Andre Levchenko, et al.Integrative Biology : Quantitative Biosciences From Nano to Macro|May 20, 2020
Modeling and measurement of signaling outcomes affecting decision making in noisy intracellular networks using machine learning methodsMustafa Ozen, Tomasz Lipniacki, Andre Levchenko, et al.Plos Computational Biology|April 6, 2017
Computation and measurement of cell decision making errors using single cell dataIman Habibi, Raymond Cheong, Tomasz Lipniacki, et al.Integrative Biology : Quantitative Biosciences From Nano to Macro|July 28, 2022
A hybrid model to study how late long-term potentiation is affected by faulty molecules in an intraneuronal signaling network regulating transcription factor CREBAli Emadi, Mustafa Ozen, Ali AbdiCardiovascular Toxicology|October 19, 2007
Deterministic and stochastic models of NFkappaB pathwayTomasz Lipniacki, Marek KimmelPhysical Biology|June 6, 2013
MEK1 and MEK2 differentially control the duration and amplitude of the ERK cascade responsePawel Kocieniewski, Tomasz LipniackiJournal of Theoretical Biology|March 25, 2009
Regulation of kinase activity by diffusion and feedbackBogdan Kazmierczak, Tomasz LipniackiPhysical Biology|June 6, 2013
Toggle switch: noise determines the winning geneJoanna Jaruszewicz, Tomasz LipniackiScientific Reports|January 29, 2021
Pareto-based evaluation of national responses to COVID-19 pandemic shows that saving lives and protecting economy are non-trade-off objectivesMarek Kochańczyk, Tomasz LipniackiPageof 32