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Physical Review. E|March 20, 2026
Tilings of a bounded region of the plane by maximal one-dimensional tilesEduardo J Aguilar, Valmir C Barbosa, Raul Donangelo, et al.Current Protocols in Bioinformatics|December 21, 2012
PatternLab: from mass spectra to label-free differential shotgun proteomicsPaulo C Carvalho, Juliana S G Fischer, Tao Xu, et al.BMC Bioinformatics|July 23, 2008
PatternLab for proteomics: a tool for differential shotgun proteomicsPaulo C Carvalho, Juliana S G Fischer, Emily I Chen, et al.Bioinformatics (Oxford, England)|November 16, 2010
Analyzing marginal cases in differential shotgun proteomicsPaulo C Carvalho, Juliana S G Fischer, Jonas Perales, et al.Bioinformatics (Oxford, England)|January 29, 2010
XDIA: improving on the label-free data-independent analysisPaulo C Carvalho, Xuemei Han, Tao Xu, et al.Analytical Chemistry|February 11, 2009
Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectraPaulo C Carvalho, Daniel Cociorva, Catherine C L Wong, et al.Journal of Proteomics|January 28, 2015
A scoring model for phosphopeptide site localization and its impact on the question of whether to use MSAJuliana de S da G Fischer, Marlon D M Dos Santos, Fabricio K Marchini, et al.Proteome Science|February 26, 2009
GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics dataPaulo C Carvalho, Juliana Sg Fischer, Emily I Chen, et al.Bioinformatics (Oxford, England)|September 21, 2022
Increasing confidence in proteomic spectral deconvolution through mass defectMilan A Clasen, Louise U Kurt, Marlon D M Santos, et al.Molecular & Cellular Proteomics : MCP|June 1, 2014
PepExplorer: a similarity-driven tool for analyzing de novo sequencing resultsFelipe V Leprevost, Richard H Valente, Diogo B Lima, et al.Pageof 6