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Bioinformatics (Oxford, England)|January 20, 2026
sRACIPE 2.0: a system biology circuit modeling toolkit for random circuit perturbationAidan Tillman, Daniel Ramirez, Mingyang LuComputational and Systems Oncology|June 24, 2021
Computational systems-biology approaches for modeling gene networks driving epithelial-mesenchymal transitionsAtaur Katebi, Daniel Ramirez, Mingyang LuFrontiers in Molecular Biosciences|May 12, 2020
Toward Modeling Context-Specific EMT Regulatory Networks Using Temporal Single Cell RNA-Seq DataDaniel Ramirez, Vivek Kohar, Mingyang LuPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|July 13, 2004
Analytical study of the effect of recombination on evolution via DNA shufflingWeiqun Peng, Herbert Levine, Terence Hwa, et al.Proceedings of the National Academy of Sciences of the United States of America|December 18, 2013
Growth feedback as a basis for persister bistabilityJingchen Feng, David A Kessler, Eshel Ben-Jacob, et al.Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 2, 2013
How input fluctuations reshape the dynamics of a biological switching systemBo Hu, David A Kessler, Wouter-Jan Rappel, et al.Physical Review Letters|November 24, 2011
Effects of input noise on a simple biochemical switchBo Hu, David A Kessler, Wouter-Jan Rappel, et al.Plos Genetics|September 15, 2010
Optimal strategy for competence differentiation in bacteriaC Scott Wylie, Aaron D Trout, David A Kessler, et al.Oncotarget|March 31, 2018
Modularity of the metabolic gene network as a prognostic biomarker for hepatocellular carcinomaFengdan Ye, Dongya Jia, Mingyang Lu, et al.NPJ Systems Biology and Applications|April 28, 2026
Rewiring miR-22/SNAI1 via CRISPR-based edge editing destabilizes the epithelial phenotypeJohn T Nguyen, Lijia Huang, Herbert Levine, et al.Pageof 68