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Methods in Molecular Biology (Clifton, N.J.)|March 29, 2017
Analysis of High-Throughput RNA Bisulfite Sequencing DataDietmar Rieder, Francesca Finotello
Methods in Cell Biology|July 19, 2025
Comprehensive prediction of tumor neoantigens with nextNEOpiMarkus Ausserhofer, Dietmar Rieder, Francesca Finotello
Methods in Enzymology|March 18, 2020
Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseqChristina Plattner, Francesca Finotello, Dietmar Rieder
Nature Reviews. Genetics|September 14, 2019
Next-generation computational tools for interrogating cancer immunityFrancesca Finotello, Dietmar Rieder, Hubert Hackl, et al.
Frontiers in Immunology|December 14, 2017
Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and ImmunotherapyMirjana Efremova, Francesca Finotello, Dietmar Rieder, et al.
Bioinformatics (Oxford, England)|November 23, 2019
NeoFuse: predicting fusion neoantigens from RNA sequencing dataGeorgios Fotakis, Dietmar Rieder, Marlene Haider, et al.
Bioinformatics (Oxford, England)|June 22, 2017
TIminer: NGS data mining pipeline for cancer immunology and immunotherapyElias Tappeiner, Francesca Finotello, Pornpimol Charoentong, et al.
Bioinformatics (Oxford, England)|July 3, 2020
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing dataGregor Sturm, Tamas Szabo, Georgios Fotakis, et al.
Bioinformatics (Oxford, England)|November 17, 2021
nextNEOpi: a comprehensive pipeline for computational neoantigen predictionDietmar Rieder, Georgios Fotakis, Markus Ausserhofer, et al.
Cell Reports|January 5, 2017
Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint BlockadePornpimol Charoentong, Francesca Finotello, Mihaela Angelova, et al.
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