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Nature Methods|June 13, 2017
FISH-ing for captured contacts: towards reconciling FISH and 3CGeoffrey Fudenberg, Maxim ImakaevNucleic Acids Research|October 3, 2008
Predicting transcription factor specificity with all-atom modelsSahand J Rahi, Peter Virnau, Leonid A Mirny, et al.Nature Communications|November 6, 2020
Molecular basis of CTCF binding polarity in genome foldingElphège P Nora, Laura Caccianini, Geoffrey Fudenberg, et al.Proceedings of the National Academy of Sciences of the United States of America|May 30, 2006
A metabolic network in the evolutionary context: multiscale structure and modularityVictor Spirin, Mikhail S Gelfand, Andrey A Mironov, et al.Cell Genomics|December 11, 2025
The physical chemistry of interphase loop extrusionMaxime M C Tortora, Geoffrey FudenbergSoft Matter|December 5, 2014
Effects of topological constraints on globular polymersMaxim V Imakaev, Konstantin M Tchourine, Sergei K Nechaev, et al.Biorxiv : the Preprint Server for Biology|September 4, 2024
The physical chemistry of interphase loop extrusionMaxime M C Tortora, Geoffrey FudenbergNature Structural & Molecular Biology|July 27, 2021
DNA-loop-extruding SMC complexes can traverse one another in vivoHugo B Brandão, Zhongqing Ren, Xheni Karaboja, et al.Proceedings of the National Academy of Sciences of the United States of America|August 22, 2007
How gene order is influenced by the biophysics of transcription regulationGrigory Kolesov, Zeba Wunderlich, Olga N Laikova, et al.Science (New York, N.Y.)|October 26, 2013
High-resolution mapping of the spatial organization of a bacterial chromosomeTung B K Le, Maxim V Imakaev, Leonid A Mirny, et al.Pageof 14