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Molecular Biology and Evolution|October 16, 2004
Different versions of the Dayhoff rate matrixCarolin Kosiol, Nick GoldmanScience (New York, N.Y.)|June 21, 2008
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysisAri Löytynoja, Nick GoldmanMolecular Biology and Evolution|November 2, 2002
A novel use of equilibrium frequencies in models of sequence evolutionNick Goldman, Simon WhelanGenetics|September 3, 2004
Estimating the frequency of events that cause multiple-nucleotide changesSimon Whelan, Nick GoldmanSystematic Biology|June 15, 2007
Resource-aware taxon selection for maximizing phylogenetic diversityFabio Pardi, Nick GoldmanMolecular Biology and Evolution|November 4, 2011
The effects of alignment error and alignment filtering on the sitewise detection of positive selectionGregory Jordan, Nick GoldmanGenetics|January 18, 2005
Detecting amino acid sites under positive selection and purifying selectionTim Massingham, Nick GoldmanSystematic Biology|November 29, 2015
Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without GapsJakub Truszkowski, Nick GoldmanProceedings of the National Academy of Sciences of the United States of America|July 8, 2005
An algorithm for progressive multiple alignment of sequences with insertionsAri Löytynoja, Nick GoldmanMolecular Biology and Evolution|November 23, 2006
Variation in evolutionary processes at different codon positionsLee Bofkin, Nick GoldmanPageof 10