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BMC Genomics|June 6, 2015
FunPat: function-based pattern analysis on RNA-seq time series dataTiziana Sanavia, Francesca Finotello, Barbara Di CamilloNPJ Systems Biology and Applications|February 6, 2026
Navigating the landscape of direct cellular reprogramming with DiReGMichael Lauber, Markus ListBriefings in Bioinformatics|December 28, 2016
Measuring the diversity of the human microbiota with targeted next-generation sequencingFrancesca Finotello, Eleonora Mastrorilli, Barbara Di CamilloIscience|August 20, 2024
Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasionÓscar Lapuente-Santana, Gregor Sturm, Joan Kant, et al.International Review of Cell and Molecular Biology|January 15, 2024
Next-generation deconvolution of transcriptomic data to investigate the tumor microenvironmentLorenzo Merotto, Maria Zopoglou, Constantin Zackl, et al.Nature Reviews. Genetics|July 5, 2016
Computational genomics tools for dissecting tumour-immune cell interactionsHubert Hackl, Pornpimol Charoentong, Francesca Finotello, et al.Methods in Cell Biology|October 17, 2025
Analysis of single-cell TCR repertoires and gene expression from multi-modal scRNA-seq dataChristina Plattner, Gregor Sturm, Dietmar RiederNature Reviews. Genetics|September 14, 2019
Next-generation computational tools for interrogating cancer immunityFrancesca Finotello, Dietmar Rieder, Hubert Hackl, et al.Frontiers in Immunology|December 14, 2017
Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and ImmunotherapyMirjana Efremova, Francesca Finotello, Dietmar Rieder, et al.Cancer Immunology Research|August 8, 2020
CD39 Identifies the CD4<sup>+</sup> Tumor-Specific T-cell Population in Human CancerKim E Kortekaas, Saskia J Santegoets, Gregor Sturm, et al.Pageof 21