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Systematic Biology|April 5, 2015
Comparative Analysis of Principal Components Can be MisleadingJosef C Uyeda, Daniel S Caetano, Matthew W PennellSystematic Biology|April 28, 2018
Rethinking phylogenetic comparative methodsJosef C Uyeda, Rosana Zenil-Ferguson, Matthew W PennellTrends in Ecology & Evolution|August 28, 2013
Is there room for punctuated equilibrium in macroevolution?Matthew W Pennell, Luke J Harmon, Josef C UyedaEvolution; International Journal of Organic Evolution|March 31, 2021
How should functional relationships be evaluated using phylogenetic comparative methods? A case study using metabolic rate and body temperatureJosef C Uyeda, Nicholas Bone, Sean McHugh, et al.The American Naturalist|July 22, 2017
The Evolution of Energetic Scaling across the Vertebrate Tree of LifeJosef C Uyeda, Matthew W Pennell, Eliot T Miller, et al.Bioinformatics (Oxford, England)|April 15, 2014
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic treesMatthew W Pennell, Jonathan M Eastman, Graham J Slater, et al.Science (New York, N.Y.)|May 9, 2024
The predictive power of genetic variationJosef C Uyeda, Joel W McGlothlinSystematic Biology|August 1, 2014
A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative dataJosef C Uyeda, Luke J HarmonNature|April 24, 2020
Extant timetrees are consistent with a myriad of diversification historiesStilianos Louca, Matthew W PennellSystematic Biology|August 22, 2019
A General and Efficient Algorithm for the Likelihood of Diversification and Discrete-Trait Evolutionary ModelsStilianos Louca, Matthew W PennellPageof 8